Cluster: HRGMv2_3292_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3292
- CGC Family ID: CGCFAM_06213
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3292_4 | HRGMv2_3292_4_156 | 200612 | 202549 | - | 3.A.23.1.1 |
| TC | HRGMv2_3292_4 | HRGMv2_3292_4_157 | 203011 | 204333 | + | 1.B.25.1.12 |
| TC | HRGMv2_3292_4 | HRGMv2_3292_4_158 | 204352 | 205932 | + | 9.B.34.1.3 |
| CAZyme | HRGMv2_3292_4 | HRGMv2_3292_4_159 | 206106 | 207017 | - | CE11 |
Gene ID: HRGMv2_3292_4_156
Type: TC
Location: 200612 - 202549 (-)
Type: TC
Location: 200612 - 202549 (-)
Gene ID: HRGMv2_3292_4_157
Type: TC
Location: 203011 - 204333 (+)
Type: TC
Location: 203011 - 204333 (+)
Gene ID: HRGMv2_3292_4_158
Type: TC
Location: 204352 - 205932 (+)
Type: TC
Location: 204352 - 205932 (+)
Gene ID: HRGMv2_3292_4_159
Type: CAZyme
Location: 206106 - 207017 (-)
Type: CAZyme
Location: 206106 - 207017 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E paracarnis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.