Cluster: HRGMv2_3201_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3201
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3201_5 | HRGMv2_3201_5_31 | 42437 | 43561 | - | GT28 |
| TC | HRGMv2_3201_5 | HRGMv2_3201_5_32 | 43634 | 44764 | - | 2.A.103.1.3 |
| TC | HRGMv2_3201_5 | HRGMv2_3201_5_33 | 44781 | 45758 | - | 9.B.146.1.3 |
Gene ID: HRGMv2_3201_5_31
Type: CAZyme
Location: 42437 - 43561 (-)
Type: CAZyme
Location: 42437 - 43561 (-)
Gene ID: HRGMv2_3201_5_32
Type: TC
Location: 43634 - 44764 (-)
Type: TC
Location: 43634 - 44764 (-)
Gene ID: HRGMv2_3201_5_33
Type: TC
Location: 44781 - 45758 (-)
Type: TC
Location: 44781 - 45758 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Species
HGM13006 sp905202605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3201_5_31 | vegetarian > vegan | 1.51924 | 0.01924 |
| HRGMv2_3201_5_33 | vegetarian > vegan | 1.23260 | 0.01924 |