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Cluster: HRGMv2_3201_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3201_4 HRGMv2_3201_4_22 23102 23758 + 9.B.18.1.2
CAZyme HRGMv2_3201_4 HRGMv2_3201_4_23 23780 24544 + GT111
pfam HRGMv2_3201_4 HRGMv2_3201_4_24 24548 25384 + LicD
pfam HRGMv2_3201_4 HRGMv2_3201_4_25 25381 25773 + CTP_transf_like
CAZyme HRGMv2_3201_4 HRGMv2_3201_4_26 25770 26762 + GT2
pfam HRGMv2_3201_4 HRGMv2_3201_4_27 26780 27982 + Wzy_C
TC HRGMv2_3201_4 HRGMv2_3201_4_28 28001 29545 + 2.A.66.1.40
Gene ID: HRGMv2_3201_4_22
Type: TC
Location: 23102 - 23758 (+)
Gene ID: HRGMv2_3201_4_23
Type: CAZyme
Location: 23780 - 24544 (+)
Gene ID: HRGMv2_3201_4_24
Type: pfam
Location: 24548 - 25384 (+)
Gene ID: HRGMv2_3201_4_25
Type: pfam
Location: 25381 - 25773 (+)
Gene ID: HRGMv2_3201_4_26
Type: CAZyme
Location: 25770 - 26762 (+)
Gene ID: HRGMv2_3201_4_27
Type: pfam
Location: 26780 - 27982 (+)
Gene ID: HRGMv2_3201_4_28
Type: TC
Location: 28001 - 29545 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3201_4_25 vegetarian > omnivore 1.97933 0.04420
HRGMv2_3201_4_25 vegetarian > vegan 1.03956 0.01924

🧭 Explore Read Mapping of CGC

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