Cluster: HRGMv2_3200_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3200
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3200_5 | HRGMv2_3200_5_10 | 10200 | 10877 | - | 3.D.1.8.1 |
| pfam | HRGMv2_3200_5 | HRGMv2_3200_5_11 | 11066 | 13738 | + | YfhO |
| pfam | HRGMv2_3200_5 | HRGMv2_3200_5_12 | 13825 | 14307 | - | tRNA_edit |
| TC | HRGMv2_3200_5 | HRGMv2_3200_5_13 | 14326 | 14919 | - | 2.A.115.2.14 |
| TF | HRGMv2_3200_5 | HRGMv2_3200_5_14 | 15098 | 15955 | - | HTH_AraC |
| CAZyme | HRGMv2_3200_5 | HRGMv2_3200_5_15 | 16184 | 17350 | - | GH5_4 |
Gene ID: HRGMv2_3200_5_10
Type: TC
Location: 10200 - 10877 (-)
Type: TC
Location: 10200 - 10877 (-)
Gene ID: HRGMv2_3200_5_11
Type: pfam
Location: 11066 - 13738 (+)
Type: pfam
Location: 11066 - 13738 (+)
Gene ID: HRGMv2_3200_5_12
Type: pfam
Location: 13825 - 14307 (-)
Type: pfam
Location: 13825 - 14307 (-)
Gene ID: HRGMv2_3200_5_13
Type: TC
Location: 14326 - 14919 (-)
Type: TC
Location: 14326 - 14919 (-)
Gene ID: HRGMv2_3200_5_14
Type: TF
Location: 15098 - 15955 (-)
Type: TF
Location: 15098 - 15955 (-)
Gene ID: HRGMv2_3200_5_15
Type: CAZyme
Location: 16184 - 17350 (-)
Type: CAZyme
Location: 16184 - 17350 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.