Cluster: HRGMv2_3200_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3200
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3200_19 | HRGMv2_3200_19_3 | 2406 | 4040 | - | 8.A.7.1.1 |
| STP | HRGMv2_3200_19 | HRGMv2_3200_19_4 | 4064 | 4321 | - | PTS-HPr |
| TC | HRGMv2_3200_19 | HRGMv2_3200_19_5 | 4340 | 6475 | - | 4.A.1.1.9 |
| CAZyme | HRGMv2_3200_19 | HRGMv2_3200_19_6 | 6730 | 8670 | + | GH42 |
| pfam | HRGMv2_3200_19 | HRGMv2_3200_19_7 | 8728 | 9156 | - | DUF1284 |
| TC | HRGMv2_3200_19 | HRGMv2_3200_19_8 | 9137 | 9712 | - | 3.A.1.25.5 |
| CAZyme | HRGMv2_3200_19 | HRGMv2_3200_19_9 | 9856 | 11817 | - | GH13_14 |
Gene ID: HRGMv2_3200_19_3
Type: TC
Location: 2406 - 4040 (-)
Type: TC
Location: 2406 - 4040 (-)
Gene ID: HRGMv2_3200_19_4
Type: STP
Location: 4064 - 4321 (-)
Type: STP
Location: 4064 - 4321 (-)
Gene ID: HRGMv2_3200_19_5
Type: TC
Location: 4340 - 6475 (-)
Type: TC
Location: 4340 - 6475 (-)
Gene ID: HRGMv2_3200_19_6
Type: CAZyme
Location: 6730 - 8670 (+)
Type: CAZyme
Location: 6730 - 8670 (+)
Gene ID: HRGMv2_3200_19_7
Type: pfam
Location: 8728 - 9156 (-)
Type: pfam
Location: 8728 - 9156 (-)
Gene ID: HRGMv2_3200_19_8
Type: TC
Location: 9137 - 9712 (-)
Type: TC
Location: 9137 - 9712 (-)
Gene ID: HRGMv2_3200_19_9
Type: CAZyme
Location: 9856 - 11817 (-)
Type: CAZyme
Location: 9856 - 11817 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.