Cluster: HRGMv2_3200_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3200
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3200_9 | HRGMv2_3200_9_20 | 16920 | 18923 | - | CBM3 | GH9 |
| TC | HRGMv2_3200_9 | HRGMv2_3200_9_21 | 19094 | 21742 | - | 4.C.1.1.4 |
| TF | HRGMv2_3200_9 | HRGMv2_3200_9_22 | 21742 | 22206 | - | MarR |
| pfam | HRGMv2_3200_9 | HRGMv2_3200_9_23 | 22441 | 22959 | + | CarD_TRCF_RID | CarD_C |
| CAZyme | HRGMv2_3200_9 | HRGMv2_3200_9_24 | 23090 | 24700 | - | CBM22 | GH10 |
| TF | HRGMv2_3200_9 | HRGMv2_3200_9_25 | 24888 | 25631 | - | MerR |
| TC | HRGMv2_3200_9 | HRGMv2_3200_9_26 | 25780 | 26745 | - | 2.A.6.4.2 |
| TC | HRGMv2_3200_9 | HRGMv2_3200_9_27 | 26738 | 28132 | - | 2.A.6.4.2 |
Gene ID: HRGMv2_3200_9_20
Type: CAZyme
Location: 16920 - 18923 (-)
Type: CAZyme
Location: 16920 - 18923 (-)
Gene ID: HRGMv2_3200_9_21
Type: TC
Location: 19094 - 21742 (-)
Type: TC
Location: 19094 - 21742 (-)
Gene ID: HRGMv2_3200_9_22
Type: TF
Location: 21742 - 22206 (-)
Type: TF
Location: 21742 - 22206 (-)
Gene ID: HRGMv2_3200_9_23
Type: pfam
Location: 22441 - 22959 (+)
Type: pfam
Location: 22441 - 22959 (+)
Gene ID: HRGMv2_3200_9_24
Type: CAZyme
Location: 23090 - 24700 (-)
Type: CAZyme
Location: 23090 - 24700 (-)
Gene ID: HRGMv2_3200_9_25
Type: TF
Location: 24888 - 25631 (-)
Type: TF
Location: 24888 - 25631 (-)
Gene ID: HRGMv2_3200_9_26
Type: TC
Location: 25780 - 26745 (-)
Type: TC
Location: 25780 - 26745 (-)
Gene ID: HRGMv2_3200_9_27
Type: TC
Location: 26738 - 28132 (-)
Type: TC
Location: 26738 - 28132 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.