Cluster: HRGMv2_3195_CGC27
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_10325
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_17 | HRGMv2_3195_17_31 | 34427 | 36307 | + | 3.A.16.1.2 |
| STP | HRGMv2_3195_17 | HRGMv2_3195_17_32 | 36384 | 36704 | - | Rhodanese |
| pfam | HRGMv2_3195_17 | HRGMv2_3195_17_33 | 36977 | 37372 | + | OAD_gamma |
| TC | HRGMv2_3195_17 | HRGMv2_3195_17_34 | 37389 | 38576 | + | 3.B.1.1.2 |
| pfam | HRGMv2_3195_17 | HRGMv2_3195_17_35 | 38645 | 39157 | - | Acetyltransf_1 | Acetyltransf_3 |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_36 | 39329 | 40534 | + | GT4 |
| pfam | HRGMv2_3195_17 | HRGMv2_3195_17_37 | 40547 | 41512 | + | GINT1_N |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_38 | 41506 | 42636 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3195_17 | HRGMv2_3195_17_39 | 42626 | 43534 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_40 | 43557 | 44669 | + | GT4 |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_41 | 44666 | 45604 | + | GT11 |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_42 | 45617 | 46645 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3195_17 | HRGMv2_3195_17_43 | 46658 | 48208 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3195_17 | HRGMv2_3195_17_44 | 48205 | 49050 | + | GT6 |
Gene ID: HRGMv2_3195_17_31
Type: TC
Location: 34427 - 36307 (+)
Type: TC
Location: 34427 - 36307 (+)
Gene ID: HRGMv2_3195_17_32
Type: STP
Location: 36384 - 36704 (-)
Type: STP
Location: 36384 - 36704 (-)
Gene ID: HRGMv2_3195_17_33
Type: pfam
Location: 36977 - 37372 (+)
Type: pfam
Location: 36977 - 37372 (+)
Gene ID: HRGMv2_3195_17_34
Type: TC
Location: 37389 - 38576 (+)
Type: TC
Location: 37389 - 38576 (+)
Gene ID: HRGMv2_3195_17_35
Type: pfam
Location: 38645 - 39157 (-)
Type: pfam
Location: 38645 - 39157 (-)
Gene ID: HRGMv2_3195_17_36
Type: CAZyme
Location: 39329 - 40534 (+)
Type: CAZyme
Location: 39329 - 40534 (+)
Gene ID: HRGMv2_3195_17_37
Type: pfam
Location: 40547 - 41512 (+)
Type: pfam
Location: 40547 - 41512 (+)
Gene ID: HRGMv2_3195_17_38
Type: CAZyme
Location: 41506 - 42636 (+)
Type: CAZyme
Location: 41506 - 42636 (+)
Gene ID: HRGMv2_3195_17_39
Type:
Location: 42626 - 43534 (+)
Type:
Location: 42626 - 43534 (+)
Gene ID: HRGMv2_3195_17_40
Type: CAZyme
Location: 43557 - 44669 (+)
Type: CAZyme
Location: 43557 - 44669 (+)
Gene ID: HRGMv2_3195_17_41
Type: CAZyme
Location: 44666 - 45604 (+)
Type: CAZyme
Location: 44666 - 45604 (+)
Gene ID: HRGMv2_3195_17_42
Type: CAZyme
Location: 45617 - 46645 (+)
Type: CAZyme
Location: 45617 - 46645 (+)
Gene ID: HRGMv2_3195_17_43
Type:
Location: 46658 - 48208 (+)
Type:
Location: 46658 - 48208 (+)
Gene ID: HRGMv2_3195_17_44
Type: CAZyme
Location: 48205 - 49050 (+)
Type: CAZyme
Location: 48205 - 49050 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.