Cluster: HRGMv2_3195_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_04013
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_12 | HRGMv2_3195_12_8 | 5979 | 6668 | + | 2.A.78.1.1 |
| pfam | HRGMv2_3195_12 | HRGMv2_3195_12_9 | 6661 | 6987 | + | AzlD |
| pfam | HRGMv2_3195_12 | HRGMv2_3195_12_10 | 7063 | 7935 | + | PPK2 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_11 | 7952 | 9061 | + | GT4 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_12 | 9058 | 10053 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3195_12 | HRGMv2_3195_12_13 | 10066 | 11289 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_14 | 11286 | 12563 | + | GT4 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_15 | 12560 | 13585 | + | GT2 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_16 | 13664 | 14671 | + | GT2 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_17 | 14716 | 15702 | + | GT2 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_18 | 15699 | 17015 | + | GT4 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_19 | 16991 | 18049 | + | GT2 |
Gene ID: HRGMv2_3195_12_8
Type: TC
Location: 5979 - 6668 (+)
Type: TC
Location: 5979 - 6668 (+)
Gene ID: HRGMv2_3195_12_9
Type: pfam
Location: 6661 - 6987 (+)
Type: pfam
Location: 6661 - 6987 (+)
Gene ID: HRGMv2_3195_12_10
Type: pfam
Location: 7063 - 7935 (+)
Type: pfam
Location: 7063 - 7935 (+)
Gene ID: HRGMv2_3195_12_11
Type: CAZyme
Location: 7952 - 9061 (+)
Type: CAZyme
Location: 7952 - 9061 (+)
Gene ID: HRGMv2_3195_12_12
Type: CAZyme
Location: 9058 - 10053 (+)
Type: CAZyme
Location: 9058 - 10053 (+)
Gene ID: HRGMv2_3195_12_13
Type:
Location: 10066 - 11289 (+)
Type:
Location: 10066 - 11289 (+)
Gene ID: HRGMv2_3195_12_14
Type: CAZyme
Location: 11286 - 12563 (+)
Type: CAZyme
Location: 11286 - 12563 (+)
Gene ID: HRGMv2_3195_12_15
Type: CAZyme
Location: 12560 - 13585 (+)
Type: CAZyme
Location: 12560 - 13585 (+)
Gene ID: HRGMv2_3195_12_16
Type: CAZyme
Location: 13664 - 14671 (+)
Type: CAZyme
Location: 13664 - 14671 (+)
Gene ID: HRGMv2_3195_12_17
Type: CAZyme
Location: 14716 - 15702 (+)
Type: CAZyme
Location: 14716 - 15702 (+)
Gene ID: HRGMv2_3195_12_18
Type: CAZyme
Location: 15699 - 17015 (+)
Type: CAZyme
Location: 15699 - 17015 (+)
Gene ID: HRGMv2_3195_12_19
Type: CAZyme
Location: 16991 - 18049 (+)
Type: CAZyme
Location: 16991 - 18049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.