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Cluster: HRGMv2_3195_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3195_8 HRGMv2_3195_8_54 51411 52370 + GT2
pfam HRGMv2_3195_8 HRGMv2_3195_8_55 52409 53602 + ATP-grasp_3 | Dala_Dala_lig_C | ATP-grasp_4
pfam HRGMv2_3195_8 HRGMv2_3195_8_56 53606 54034 + EamA
TC HRGMv2_3195_8 HRGMv2_3195_8_57 54031 54375 + 2.A.7.33.5
NULL(UNKNOWN) HRGMv2_3195_8 HRGMv2_3195_8_58 54368 56434 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3195_8 HRGMv2_3195_8_59 56549 58045 - DUF6056
CAZyme HRGMv2_3195_8 HRGMv2_3195_8_60 58063 60399 - GT2 | GT4
CAZyme HRGMv2_3195_8 HRGMv2_3195_8_61 60432 61397 - GT2
CAZyme HRGMv2_3195_8 HRGMv2_3195_8_62 61426 62316 - GT2
Gene ID: HRGMv2_3195_8_54
Type: CAZyme
Location: 51411 - 52370 (+)
Gene ID: HRGMv2_3195_8_55
Type: pfam
Location: 52409 - 53602 (+)
Gene ID: HRGMv2_3195_8_56
Type: pfam
Location: 53606 - 54034 (+)
Gene ID: HRGMv2_3195_8_57
Type: TC
Location: 54031 - 54375 (+)
Gene ID: HRGMv2_3195_8_58
Type:
Location: 54368 - 56434 (+)
Gene ID: HRGMv2_3195_8_59
Type: pfam
Location: 56549 - 58045 (-)
Gene ID: HRGMv2_3195_8_60
Type: CAZyme
Location: 58063 - 60399 (-)
Gene ID: HRGMv2_3195_8_61
Type: CAZyme
Location: 60432 - 61397 (-)
Gene ID: HRGMv2_3195_8_62
Type: CAZyme
Location: 61426 - 62316 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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