Cluster: HRGMv2_3194_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3194
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_3 | HRGMv2_3194_3_53 | 67070 | 69562 | + | GH31_2 |
| pfam | HRGMv2_3194_3 | HRGMv2_3194_3_54 | 69623 | 70438 | - | Polysacc_deac_1 |
| peptidase | HRGMv2_3194_3 | HRGMv2_3194_3_55 | 70506 | 71264 | - | C60.002 |
| TC | HRGMv2_3194_3 | HRGMv2_3194_3_56 | 71784 | 72302 | + | 3.A.1.26.5 |
Gene ID: HRGMv2_3194_3_53
Type: CAZyme
Location: 67070 - 69562 (+)
Type: CAZyme
Location: 67070 - 69562 (+)
Gene ID: HRGMv2_3194_3_54
Type: pfam
Location: 69623 - 70438 (-)
Type: pfam
Location: 69623 - 70438 (-)
Gene ID: HRGMv2_3194_3_55
Type: peptidase
Location: 70506 - 71264 (-)
Type: peptidase
Location: 70506 - 71264 (-)
Gene ID: HRGMv2_3194_3_56
Type: TC
Location: 71784 - 72302 (+)
Type: TC
Location: 71784 - 72302 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3194_3_54 | vegetarian > omnivore | 1.70264 | 0.01557 |