Cluster: HRGMv2_3194_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate: galactan
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00078
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_156 | 185128 | 186642 | - | GH79 |
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_157 | 186695 | 188947 | - | GH3 |
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_158 | 189027 | 190847 | - | GH2 |
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_159 | 191249 | 192775 | + | 2.A.2.3.2 |
Gene ID: HRGMv2_3194_2_156
Type: CAZyme
Location: 185128 - 186642 (-)
Type: CAZyme
Location: 185128 - 186642 (-)
Gene ID: HRGMv2_3194_2_157
Type: CAZyme
Location: 186695 - 188947 (-)
Type: CAZyme
Location: 186695 - 188947 (-)
Gene ID: HRGMv2_3194_2_158
Type: CAZyme
Location: 189027 - 190847 (-)
Type: CAZyme
Location: 189027 - 190847 (-)
Gene ID: HRGMv2_3194_2_159
Type: TC
Location: 191249 - 192775 (+)
Type: TC
Location: 191249 - 192775 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.