Cluster: HRGMv2_3194_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_08316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_124 | 146711 | 148417 | + | 4.A.1.2.6 |
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_125 | 148518 | 149960 | + | GH1 |
| pfam | HRGMv2_3194_2 | HRGMv2_3194_2_126 | 150055 | 150900 | + | Hydrolase_3 |
| STP | HRGMv2_3194_2 | HRGMv2_3194_2_127 | 151121 | 151378 | + | PTS-HPr |
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_128 | 151461 | 153140 | + | 8.A.7.1.1 |
| TF | HRGMv2_3194_2 | HRGMv2_3194_2_129 | 153200 | 154009 | - | MerR |
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_130 | 154178 | 158425 | + | 9.B.34.1.1 |
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_131 | 158638 | 159969 | + | 2.A.66.1.7 |
| STP | HRGMv2_3194_2 | HRGMv2_3194_2_132 | 160007 | 160765 | - | Fer4 |
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_133 | 160850 | 162286 | - | GH1 |
| CAZyme | HRGMv2_3194_2 | HRGMv2_3194_2_134 | 162318 | 164999 | - | GH106 |
| TC | HRGMv2_3194_2 | HRGMv2_3194_2_135 | 165120 | 166514 | - | 4.A.1.2.2 |
Gene ID: HRGMv2_3194_2_124
Type: TC
Location: 146711 - 148417 (+)
Type: TC
Location: 146711 - 148417 (+)
Gene ID: HRGMv2_3194_2_125
Type: CAZyme
Location: 148518 - 149960 (+)
Type: CAZyme
Location: 148518 - 149960 (+)
Gene ID: HRGMv2_3194_2_126
Type: pfam
Location: 150055 - 150900 (+)
Type: pfam
Location: 150055 - 150900 (+)
Gene ID: HRGMv2_3194_2_127
Type: STP
Location: 151121 - 151378 (+)
Type: STP
Location: 151121 - 151378 (+)
Gene ID: HRGMv2_3194_2_128
Type: TC
Location: 151461 - 153140 (+)
Type: TC
Location: 151461 - 153140 (+)
Gene ID: HRGMv2_3194_2_129
Type: TF
Location: 153200 - 154009 (-)
Type: TF
Location: 153200 - 154009 (-)
Gene ID: HRGMv2_3194_2_130
Type: TC
Location: 154178 - 158425 (+)
Type: TC
Location: 154178 - 158425 (+)
Gene ID: HRGMv2_3194_2_131
Type: TC
Location: 158638 - 159969 (+)
Type: TC
Location: 158638 - 159969 (+)
Gene ID: HRGMv2_3194_2_132
Type: STP
Location: 160007 - 160765 (-)
Type: STP
Location: 160007 - 160765 (-)
Gene ID: HRGMv2_3194_2_133
Type: CAZyme
Location: 160850 - 162286 (-)
Type: CAZyme
Location: 160850 - 162286 (-)
Gene ID: HRGMv2_3194_2_134
Type: CAZyme
Location: 162318 - 164999 (-)
Type: CAZyme
Location: 162318 - 164999 (-)
Gene ID: HRGMv2_3194_2_135
Type: TC
Location: 165120 - 166514 (-)
Type: TC
Location: 165120 - 166514 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3194_2_124 | vegetarian > omnivore | 1.37210 | 0.01557 |
| HRGMv2_3194_2_124 | vegetarian > vegan | 1.64182 | 0.01089 |
| HRGMv2_3194_2_135 | vegetarian > omnivore | 1.51475 | 0.01557 |