Cluster: HRGMv2_3194_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_03285
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_54 | HRGMv2_3194_54_7 | 3889 | 4827 | - | GT2 |
| pfam | HRGMv2_3194_54 | HRGMv2_3194_54_8 | 4878 | 6260 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_3194_54 | HRGMv2_3194_54_9 | 6300 | 8591 | - | GT2 | GT4 |
| CAZyme | HRGMv2_3194_54 | HRGMv2_3194_54_10 | 8621 | 9586 | - | GT2 |
| TC | HRGMv2_3194_54 | HRGMv2_3194_54_11 | 9814 | 11745 | - | 4.A.2.1.4 |
Gene ID: HRGMv2_3194_54_7
Type: CAZyme
Location: 3889 - 4827 (-)
Type: CAZyme
Location: 3889 - 4827 (-)
Gene ID: HRGMv2_3194_54_8
Type: pfam
Location: 4878 - 6260 (-)
Type: pfam
Location: 4878 - 6260 (-)
Gene ID: HRGMv2_3194_54_9
Type: CAZyme
Location: 6300 - 8591 (-)
Type: CAZyme
Location: 6300 - 8591 (-)
Gene ID: HRGMv2_3194_54_10
Type: CAZyme
Location: 8621 - 9586 (-)
Type: CAZyme
Location: 8621 - 9586 (-)
Gene ID: HRGMv2_3194_54_11
Type: TC
Location: 9814 - 11745 (-)
Type: TC
Location: 9814 - 11745 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.