Cluster: HRGMv2_3194_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3194
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_53 | HRGMv2_3194_53_3 | 2786 | 3838 | + | 9.B.18.2.1 |
| pfam | HRGMv2_3194_53 | HRGMv2_3194_53_4 | 3825 | 5009 | + | Epimerase | Polysacc_synt_C |
| pfam | HRGMv2_3194_53 | HRGMv2_3194_53_5 | 5041 | 6180 | + | Epimerase_2 |
| CAZyme | HRGMv2_3194_53 | HRGMv2_3194_53_6 | 6203 | 7429 | + | GT4 |
| CAZyme | HRGMv2_3194_53 | HRGMv2_3194_53_7 | 7491 | 8210 | + | GT2 |
| pfam | HRGMv2_3194_53 | HRGMv2_3194_53_8 | 8254 | 8637 | + | DUF2304 |
| TC | HRGMv2_3194_53 | HRGMv2_3194_53_9 | 8672 | 10132 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_3194_53_3
Type: TC
Location: 2786 - 3838 (+)
Type: TC
Location: 2786 - 3838 (+)
Gene ID: HRGMv2_3194_53_4
Type: pfam
Location: 3825 - 5009 (+)
Type: pfam
Location: 3825 - 5009 (+)
Gene ID: HRGMv2_3194_53_5
Type: pfam
Location: 5041 - 6180 (+)
Type: pfam
Location: 5041 - 6180 (+)
Gene ID: HRGMv2_3194_53_6
Type: CAZyme
Location: 6203 - 7429 (+)
Type: CAZyme
Location: 6203 - 7429 (+)
Gene ID: HRGMv2_3194_53_7
Type: CAZyme
Location: 7491 - 8210 (+)
Type: CAZyme
Location: 7491 - 8210 (+)
Gene ID: HRGMv2_3194_53_8
Type: pfam
Location: 8254 - 8637 (+)
Type: pfam
Location: 8254 - 8637 (+)
Gene ID: HRGMv2_3194_53_9
Type: TC
Location: 8672 - 10132 (+)
Type: TC
Location: 8672 - 10132 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.