Cluster: HRGMv2_3194_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_04013
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_32 | HRGMv2_3194_32_3 | 1966 | 2961 | - | GT2 |
| CAZyme | HRGMv2_3194_32 | HRGMv2_3194_32_4 | 2958 | 4067 | - | GT4 |
| pfam | HRGMv2_3194_32 | HRGMv2_3194_32_5 | 4085 | 4957 | - | PPK2 |
| pfam | HRGMv2_3194_32 | HRGMv2_3194_32_6 | 5032 | 5358 | - | AzlD |
| TC | HRGMv2_3194_32 | HRGMv2_3194_32_7 | 5351 | 6034 | - | 2.A.78.1.1 |
Gene ID: HRGMv2_3194_32_3
Type: CAZyme
Location: 1966 - 2961 (-)
Type: CAZyme
Location: 1966 - 2961 (-)
Gene ID: HRGMv2_3194_32_4
Type: CAZyme
Location: 2958 - 4067 (-)
Type: CAZyme
Location: 2958 - 4067 (-)
Gene ID: HRGMv2_3194_32_5
Type: pfam
Location: 4085 - 4957 (-)
Type: pfam
Location: 4085 - 4957 (-)
Gene ID: HRGMv2_3194_32_6
Type: pfam
Location: 5032 - 5358 (-)
Type: pfam
Location: 5032 - 5358 (-)
Gene ID: HRGMv2_3194_32_7
Type: TC
Location: 5351 - 6034 (-)
Type: TC
Location: 5351 - 6034 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.