Cluster: HRGMv2_3194_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00098
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_5 | 2865 | 3164 | - | GH4 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_6 | 3350 | 4978 | - | GH13_31 |
| pfam | HRGMv2_3194_26 | HRGMv2_3194_26_7 | 5023 | 5748 | - | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_8 | 5776 | 7491 | - | CBM34 | GH13_20 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_9 | 7488 | 8963 | - | GH77 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_10 | 8974 | 11232 | - | GT35 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_11 | 11244 | 13205 | - | GH133 |
| CAZyme | HRGMv2_3194_26 | HRGMv2_3194_26_12 | 13222 | 15150 | - | GH13_14 |
| TC | HRGMv2_3194_26 | HRGMv2_3194_26_13 | 15190 | 16056 | - | 3.A.1.1.27 |
| TC | HRGMv2_3194_26 | HRGMv2_3194_26_14 | 16059 | 17441 | - | 3.A.1.1.27 |
| STP | HRGMv2_3194_26 | HRGMv2_3194_26_15 | 17460 | 18689 | - | SBP_bac_1 |
| TF | HRGMv2_3194_26 | HRGMv2_3194_26_16 | 18955 | 19953 | + | LacI |
| TC | HRGMv2_3194_26 | HRGMv2_3194_26_17 | 20099 | 21475 | - | 1.A.34.1.3 |
Gene ID: HRGMv2_3194_26_5
Type: CAZyme
Location: 2865 - 3164 (-)
Type: CAZyme
Location: 2865 - 3164 (-)
Gene ID: HRGMv2_3194_26_6
Type: CAZyme
Location: 3350 - 4978 (-)
Type: CAZyme
Location: 3350 - 4978 (-)
Gene ID: HRGMv2_3194_26_7
Type: pfam
Location: 5023 - 5748 (-)
Type: pfam
Location: 5023 - 5748 (-)
Gene ID: HRGMv2_3194_26_8
Type: CAZyme
Location: 5776 - 7491 (-)
Type: CAZyme
Location: 5776 - 7491 (-)
Gene ID: HRGMv2_3194_26_9
Type: CAZyme
Location: 7488 - 8963 (-)
Type: CAZyme
Location: 7488 - 8963 (-)
Gene ID: HRGMv2_3194_26_10
Type: CAZyme
Location: 8974 - 11232 (-)
Type: CAZyme
Location: 8974 - 11232 (-)
Gene ID: HRGMv2_3194_26_11
Type: CAZyme
Location: 11244 - 13205 (-)
Type: CAZyme
Location: 11244 - 13205 (-)
Gene ID: HRGMv2_3194_26_12
Type: CAZyme
Location: 13222 - 15150 (-)
Type: CAZyme
Location: 13222 - 15150 (-)
Gene ID: HRGMv2_3194_26_13
Type: TC
Location: 15190 - 16056 (-)
Type: TC
Location: 15190 - 16056 (-)
Gene ID: HRGMv2_3194_26_14
Type: TC
Location: 16059 - 17441 (-)
Type: TC
Location: 16059 - 17441 (-)
Gene ID: HRGMv2_3194_26_15
Type: STP
Location: 17460 - 18689 (-)
Type: STP
Location: 17460 - 18689 (-)
Gene ID: HRGMv2_3194_26_16
Type: TF
Location: 18955 - 19953 (+)
Type: TF
Location: 18955 - 19953 (+)
Gene ID: HRGMv2_3194_26_17
Type: TC
Location: 20099 - 21475 (-)
Type: TC
Location: 20099 - 21475 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.