Cluster: HRGMv2_3194_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00259
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_24 | HRGMv2_3194_24_27 | 26687 | 28330 | + | 3.A.1.1.10 |
| TC | HRGMv2_3194_24 | HRGMv2_3194_24_28 | 28455 | 29426 | + | 3.A.1.1.10 |
| TC | HRGMv2_3194_24 | HRGMv2_3194_24_29 | 29439 | 30344 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_3194_24 | HRGMv2_3194_24_30 | 30424 | 32349 | + | GH154 |
| CAZyme | HRGMv2_3194_24 | HRGMv2_3194_24_31 | 32382 | 34232 | + | PL33_1 |
| CAZyme | HRGMv2_3194_24 | HRGMv2_3194_24_32 | 34272 | 35435 | + | GH88 |
Gene ID: HRGMv2_3194_24_27
Type: TC
Location: 26687 - 28330 (+)
Type: TC
Location: 26687 - 28330 (+)
Gene ID: HRGMv2_3194_24_28
Type: TC
Location: 28455 - 29426 (+)
Type: TC
Location: 28455 - 29426 (+)
Gene ID: HRGMv2_3194_24_29
Type: TC
Location: 29439 - 30344 (+)
Type: TC
Location: 29439 - 30344 (+)
Gene ID: HRGMv2_3194_24_30
Type: CAZyme
Location: 30424 - 32349 (+)
Type: CAZyme
Location: 30424 - 32349 (+)
Gene ID: HRGMv2_3194_24_31
Type: CAZyme
Location: 32382 - 34232 (+)
Type: CAZyme
Location: 32382 - 34232 (+)
Gene ID: HRGMv2_3194_24_32
Type: CAZyme
Location: 34272 - 35435 (+)
Type: CAZyme
Location: 34272 - 35435 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3194_24_28 | vegan > omnivore | 2.93058 | 0.01465 |
| HRGMv2_3194_24_28 | vegetarian > omnivore | 3.07011 | 0.01557 |
| HRGMv2_3194_24_32 | vegetarian > omnivore | 1.20008 | 0.01557 |