Cluster: HRGMv2_3194_CGC31
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_01647
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_21 | HRGMv2_3194_21_20 | 13939 | 15300 | + | 2.A.38.1.1 |
| TC | HRGMv2_3194_21 | HRGMv2_3194_21_21 | 15313 | 16785 | + | 2.A.38.1.1 |
| CAZyme | HRGMv2_3194_21 | HRGMv2_3194_21_22 | 16894 | 17688 | + | CE4 |
| NULL(UNKNOWN) | HRGMv2_3194_21 | HRGMv2_3194_21_23 | 17722 | 18315 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3194_21 | HRGMv2_3194_21_24 | 18351 | 19658 | + | GH13_20 |
| TC | HRGMv2_3194_21 | HRGMv2_3194_21_25 | 19715 | 20575 | + | 2.A.7.2.1 |
Gene ID: HRGMv2_3194_21_20
Type: TC
Location: 13939 - 15300 (+)
Type: TC
Location: 13939 - 15300 (+)
Gene ID: HRGMv2_3194_21_21
Type: TC
Location: 15313 - 16785 (+)
Type: TC
Location: 15313 - 16785 (+)
Gene ID: HRGMv2_3194_21_22
Type: CAZyme
Location: 16894 - 17688 (+)
Type: CAZyme
Location: 16894 - 17688 (+)
Gene ID: HRGMv2_3194_21_23
Type:
Location: 17722 - 18315 (+)
Type:
Location: 17722 - 18315 (+)
Gene ID: HRGMv2_3194_21_24
Type: CAZyme
Location: 18351 - 19658 (+)
Type: CAZyme
Location: 18351 - 19658 (+)
Gene ID: HRGMv2_3194_21_25
Type: TC
Location: 19715 - 20575 (+)
Type: TC
Location: 19715 - 20575 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.