Cluster: HRGMv2_3194_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_10328
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_20 | HRGMv2_3194_20_32 | 35424 | 36362 | + | 3.A.1.121.4 |
| pfam | HRGMv2_3194_20 | HRGMv2_3194_20_33 | 36447 | 36893 | - | HSP20 | ArsA_HSP20 |
| TC | HRGMv2_3194_20 | HRGMv2_3194_20_34 | 37161 | 38495 | - | 2.A.66.1.7 |
| pfam | HRGMv2_3194_20 | HRGMv2_3194_20_35 | 38680 | 39864 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| STP | HRGMv2_3194_20 | HRGMv2_3194_20_36 | 40147 | 41505 | + | Citrate_synt |
| CAZyme | HRGMv2_3194_20 | HRGMv2_3194_20_37 | 41687 | 43621 | + | GH13_14 |
Gene ID: HRGMv2_3194_20_32
Type: TC
Location: 35424 - 36362 (+)
Type: TC
Location: 35424 - 36362 (+)
Gene ID: HRGMv2_3194_20_33
Type: pfam
Location: 36447 - 36893 (-)
Type: pfam
Location: 36447 - 36893 (-)
Gene ID: HRGMv2_3194_20_34
Type: TC
Location: 37161 - 38495 (-)
Type: TC
Location: 37161 - 38495 (-)
Gene ID: HRGMv2_3194_20_35
Type: pfam
Location: 38680 - 39864 (-)
Type: pfam
Location: 38680 - 39864 (-)
Gene ID: HRGMv2_3194_20_36
Type: STP
Location: 40147 - 41505 (+)
Type: STP
Location: 40147 - 41505 (+)
Gene ID: HRGMv2_3194_20_37
Type: CAZyme
Location: 41687 - 43621 (+)
Type: CAZyme
Location: 41687 - 43621 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.