Cluster: HRGMv2_3194_CGC29
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00462
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_20 | HRGMv2_3194_20_5 | 3107 | 4093 | - | 8.A.5.1.3 |
| CAZyme | HRGMv2_3194_20 | HRGMv2_3194_20_6 | 4128 | 6284 | - | GH112 |
| CAZyme | HRGMv2_3194_20 | HRGMv2_3194_20_7 | 6325 | 7968 | - | CE12 |
| CAZyme | HRGMv2_3194_20 | HRGMv2_3194_20_8 | 7970 | 9019 | - | GH105 |
| STP | HRGMv2_3194_20 | HRGMv2_3194_20_9 | 9169 | 10845 | - | SBP_bac_1 |
| TC | HRGMv2_3194_20 | HRGMv2_3194_20_10 | 10927 | 11859 | - | 3.A.1.1.10 |
| TC | HRGMv2_3194_20 | HRGMv2_3194_20_11 | 11876 | 12823 | - | 3.A.1.1.10 |
| TF | HRGMv2_3194_20 | HRGMv2_3194_20_12 | 13202 | 14131 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3194_20 | HRGMv2_3194_20_13 | 14166 | 15509 | + | GH28 |
Gene ID: HRGMv2_3194_20_5
Type: TC
Location: 3107 - 4093 (-)
Type: TC
Location: 3107 - 4093 (-)
Gene ID: HRGMv2_3194_20_6
Type: CAZyme
Location: 4128 - 6284 (-)
Type: CAZyme
Location: 4128 - 6284 (-)
Gene ID: HRGMv2_3194_20_7
Type: CAZyme
Location: 6325 - 7968 (-)
Type: CAZyme
Location: 6325 - 7968 (-)
Gene ID: HRGMv2_3194_20_8
Type: CAZyme
Location: 7970 - 9019 (-)
Type: CAZyme
Location: 7970 - 9019 (-)
Gene ID: HRGMv2_3194_20_9
Type: STP
Location: 9169 - 10845 (-)
Type: STP
Location: 9169 - 10845 (-)
Gene ID: HRGMv2_3194_20_10
Type: TC
Location: 10927 - 11859 (-)
Type: TC
Location: 10927 - 11859 (-)
Gene ID: HRGMv2_3194_20_11
Type: TC
Location: 11876 - 12823 (-)
Type: TC
Location: 11876 - 12823 (-)
Gene ID: HRGMv2_3194_20_12
Type: TF
Location: 13202 - 14131 (+)
Type: TF
Location: 13202 - 14131 (+)
Gene ID: HRGMv2_3194_20_13
Type: CAZyme
Location: 14166 - 15509 (+)
Type: CAZyme
Location: 14166 - 15509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3194_20_6 | vegan > omnivore | 1.00648 | 0.01465 |
| HRGMv2_3194_20_6 | vegetarian > omnivore | 1.38393 | 0.01557 |
| HRGMv2_3194_20_8 | vegan > omnivore | 1.38322 | 0.01465 |
| HRGMv2_3194_20_8 | vegetarian > omnivore | 1.29467 | 0.01557 |
| HRGMv2_3194_20_10 | vegan > omnivore | 2.04456 | 0.01465 |
| HRGMv2_3194_20_11 | vegan > omnivore | 2.07681 | 0.01465 |
| HRGMv2_3194_20_12 | vegan > omnivore | 1.08218 | 0.01465 |
| HRGMv2_3194_20_12 | vegetarian > omnivore | 1.74221 | 0.01557 |
| HRGMv2_3194_20_13 | vegetarian > omnivore | 1.41787 | 0.01557 |