Cluster: HRGMv2_3194_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_10327
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_18 | HRGMv2_3194_18_2 | 939 | 1418 | - | 1.A.22.1.3 |
| TC | HRGMv2_3194_18 | HRGMv2_3194_18_3 | 1437 | 2261 | - | 3.A.1.132.3 |
| pfam | HRGMv2_3194_18 | HRGMv2_3194_18_4 | 2434 | 3255 | - | PNP_UDP_1 |
| pfam | HRGMv2_3194_18 | HRGMv2_3194_18_5 | 3383 | 4903 | + | MatE | Polysacc_synt |
| CAZyme | HRGMv2_3194_18 | HRGMv2_3194_18_6 | 4906 | 6483 | - | GH77 |
| TC | HRGMv2_3194_18 | HRGMv2_3194_18_7 | 6647 | 8410 | - | 3.A.1.106.2 |
Gene ID: HRGMv2_3194_18_2
Type: TC
Location: 939 - 1418 (-)
Type: TC
Location: 939 - 1418 (-)
Gene ID: HRGMv2_3194_18_3
Type: TC
Location: 1437 - 2261 (-)
Type: TC
Location: 1437 - 2261 (-)
Gene ID: HRGMv2_3194_18_4
Type: pfam
Location: 2434 - 3255 (-)
Type: pfam
Location: 2434 - 3255 (-)
Gene ID: HRGMv2_3194_18_5
Type: pfam
Location: 3383 - 4903 (+)
Type: pfam
Location: 3383 - 4903 (+)
Gene ID: HRGMv2_3194_18_6
Type: CAZyme
Location: 4906 - 6483 (-)
Type: CAZyme
Location: 4906 - 6483 (-)
Gene ID: HRGMv2_3194_18_7
Type: TC
Location: 6647 - 8410 (-)
Type: TC
Location: 6647 - 8410 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.