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Cluster: HRGMv2_3194_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3194_16 HRGMv2_3194_16_2 1288 2754 + 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_3194_16 HRGMv2_3194_16_3 2767 3750 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3194_16 HRGMv2_3194_16_4 4104 5336 + PFK
TC HRGMv2_3194_16 HRGMv2_3194_16_5 5928 7055 + 3.A.1.1.22
TC HRGMv2_3194_16 HRGMv2_3194_16_6 7052 7921 + 3.A.1.1.11
TC HRGMv2_3194_16 HRGMv2_3194_16_7 7921 8853 + 3.A.1.1.34
TC HRGMv2_3194_16 HRGMv2_3194_16_8 8933 10354 + 3.A.1.1.3
pfam HRGMv2_3194_16 HRGMv2_3194_16_9 10427 11161 + GDPD
pfam HRGMv2_3194_16 HRGMv2_3194_16_10 11167 12018 + Hydrolase | Hydrolase_like | Hydrolase_6 | HAD_2
TC HRGMv2_3194_16 HRGMv2_3194_16_11 12086 13426 - 2.A.26.1.3
pfam HRGMv2_3194_16 HRGMv2_3194_16_12 13587 14426 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
pfam HRGMv2_3194_16 HRGMv2_3194_16_13 14435 14704 - DUF6171
CAZyme HRGMv2_3194_16 HRGMv2_3194_16_14 15044 16093 + GH105
CAZyme HRGMv2_3194_16 HRGMv2_3194_16_15 16195 18357 + GH112
CAZyme HRGMv2_3194_16 HRGMv2_3194_16_16 18370 19830 + GH51_1
TC HRGMv2_3194_16 HRGMv2_3194_16_17 20468 21475 + 3.A.1.1.10
TC HRGMv2_3194_16 HRGMv2_3194_16_18 21494 22429 + 3.A.1.1.29
pfam HRGMv2_3194_16 HRGMv2_3194_16_19 22495 24081 + SBP_bac_8
CAZyme HRGMv2_3194_16 HRGMv2_3194_16_20 24212 27367 + CE12 | PL11
CAZyme HRGMv2_3194_16 HRGMv2_3194_16_21 27371 28558 + PL22 | PL22
Gene ID: HRGMv2_3194_16_2
Type: TC
Location: 1288 - 2754 (+)
Gene ID: HRGMv2_3194_16_3
Type:
Location: 2767 - 3750 (+)
Gene ID: HRGMv2_3194_16_4
Type: pfam
Location: 4104 - 5336 (+)
Gene ID: HRGMv2_3194_16_5
Type: TC
Location: 5928 - 7055 (+)
Gene ID: HRGMv2_3194_16_6
Type: TC
Location: 7052 - 7921 (+)
Gene ID: HRGMv2_3194_16_7
Type: TC
Location: 7921 - 8853 (+)
Gene ID: HRGMv2_3194_16_8
Type: TC
Location: 8933 - 10354 (+)
Gene ID: HRGMv2_3194_16_9
Type: pfam
Location: 10427 - 11161 (+)
Gene ID: HRGMv2_3194_16_10
Type: pfam
Location: 11167 - 12018 (+)
Gene ID: HRGMv2_3194_16_11
Type: TC
Location: 12086 - 13426 (-)
Gene ID: HRGMv2_3194_16_12
Type: pfam
Location: 13587 - 14426 (+)
Gene ID: HRGMv2_3194_16_13
Type: pfam
Location: 14435 - 14704 (-)
Gene ID: HRGMv2_3194_16_14
Type: CAZyme
Location: 15044 - 16093 (+)
Gene ID: HRGMv2_3194_16_15
Type: CAZyme
Location: 16195 - 18357 (+)
Gene ID: HRGMv2_3194_16_16
Type: CAZyme
Location: 18370 - 19830 (+)
Gene ID: HRGMv2_3194_16_17
Type: TC
Location: 20468 - 21475 (+)
Gene ID: HRGMv2_3194_16_18
Type: TC
Location: 21494 - 22429 (+)
Gene ID: HRGMv2_3194_16_19
Type: pfam
Location: 22495 - 24081 (+)
Gene ID: HRGMv2_3194_16_20
Type: CAZyme
Location: 24212 - 27367 (+)
Gene ID: HRGMv2_3194_16_21
Type: CAZyme
Location: 27371 - 28558 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3194_16_14 vegan > omnivore 1.25858 0.01465
HRGMv2_3194_16_14 vegetarian > omnivore 1.17462 0.01557
HRGMv2_3194_16_15 vegetarian > omnivore 1.39211 0.01557
HRGMv2_3194_16_17 vegetarian > omnivore 1.05561 0.01557
HRGMv2_3194_16_18 vegetarian > omnivore 1.03781 0.01557
HRGMv2_3194_16_19 vegan > omnivore 1.06281 0.01465
HRGMv2_3194_16_19 vegetarian > omnivore 1.16243 0.01557
HRGMv2_3194_16_20 vegetarian > omnivore 1.42613 0.01557
HRGMv2_3194_16_21 vegetarian > omnivore 1.26952 0.01557

🧭 Explore Read Mapping of CGC

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