Cluster: HRGMv2_3194_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00233
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_13 | HRGMv2_3194_13_13 | 16461 | 18899 | - | GH3 |
| CAZyme | HRGMv2_3194_13 | HRGMv2_3194_13_14 | 19041 | 21992 | - | GH3 |
| pfam | HRGMv2_3194_13 | HRGMv2_3194_13_15 | 22507 | 23790 | - | HATPase_c_5 |
| TF | HRGMv2_3194_13 | HRGMv2_3194_13_16 | 23787 | 24497 | - | LytTR |
| TC | HRGMv2_3194_13 | HRGMv2_3194_13_17 | 24638 | 26083 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_3194_13_13
Type: CAZyme
Location: 16461 - 18899 (-)
Type: CAZyme
Location: 16461 - 18899 (-)
Gene ID: HRGMv2_3194_13_14
Type: CAZyme
Location: 19041 - 21992 (-)
Type: CAZyme
Location: 19041 - 21992 (-)
Gene ID: HRGMv2_3194_13_15
Type: pfam
Location: 22507 - 23790 (-)
Type: pfam
Location: 22507 - 23790 (-)
Gene ID: HRGMv2_3194_13_16
Type: TF
Location: 23787 - 24497 (-)
Type: TF
Location: 23787 - 24497 (-)
Gene ID: HRGMv2_3194_13_17
Type: TC
Location: 24638 - 26083 (-)
Type: TC
Location: 24638 - 26083 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.