Cluster: HRGMv2_3194_CGC21
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_00102
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_11 | HRGMv2_3194_11_39 | 42114 | 43640 | + | CE20 | CE20 |
| pfam | HRGMv2_3194_11 | HRGMv2_3194_11_40 | 43730 | 50197 | - | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 | Beta_helix_3 |
| CAZyme | HRGMv2_3194_11 | HRGMv2_3194_11_41 | 50444 | 51961 | - | GT26 |
| NULL(UNKNOWN) | HRGMv2_3194_11 | HRGMv2_3194_11_42 | 52317 | 53666 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3194_11 | HRGMv2_3194_11_43 | 53636 | 55135 | - | GT4 |
| TC | HRGMv2_3194_11 | HRGMv2_3194_11_44 | 55153 | 57477 | - | 3.A.5.10.1 |
| pfam | HRGMv2_3194_11 | HRGMv2_3194_11_45 | 57464 | 57910 | - | Sec-ASP3 |
| TC | HRGMv2_3194_11 | HRGMv2_3194_11_46 | 57907 | 59427 | - | 3.A.5.10.1 |
| pfam | HRGMv2_3194_11 | HRGMv2_3194_11_47 | 59390 | 61015 | - | Asp1 |
| TC | HRGMv2_3194_11 | HRGMv2_3194_11_48 | 61027 | 62229 | - | 3.A.5.2.1 |
Gene ID: HRGMv2_3194_11_39
Type: CAZyme
Location: 42114 - 43640 (+)
Type: CAZyme
Location: 42114 - 43640 (+)
Gene ID: HRGMv2_3194_11_40
Type: pfam
Location: 43730 - 50197 (-)
Type: pfam
Location: 43730 - 50197 (-)
Gene ID: HRGMv2_3194_11_41
Type: CAZyme
Location: 50444 - 51961 (-)
Type: CAZyme
Location: 50444 - 51961 (-)
Gene ID: HRGMv2_3194_11_42
Type:
Location: 52317 - 53666 (-)
Type:
Location: 52317 - 53666 (-)
Gene ID: HRGMv2_3194_11_43
Type: CAZyme
Location: 53636 - 55135 (-)
Type: CAZyme
Location: 53636 - 55135 (-)
Gene ID: HRGMv2_3194_11_44
Type: TC
Location: 55153 - 57477 (-)
Type: TC
Location: 55153 - 57477 (-)
Gene ID: HRGMv2_3194_11_45
Type: pfam
Location: 57464 - 57910 (-)
Type: pfam
Location: 57464 - 57910 (-)
Gene ID: HRGMv2_3194_11_46
Type: TC
Location: 57907 - 59427 (-)
Type: TC
Location: 57907 - 59427 (-)
Gene ID: HRGMv2_3194_11_47
Type: pfam
Location: 59390 - 61015 (-)
Type: pfam
Location: 59390 - 61015 (-)
Gene ID: HRGMv2_3194_11_48
Type: TC
Location: 61027 - 62229 (-)
Type: TC
Location: 61027 - 62229 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.