Cluster: HRGMv2_3194_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_10333
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_8 | HRGMv2_3194_8_16 | 18085 | 19194 | - | GH88 |
| TF | HRGMv2_3194_8 | HRGMv2_3194_8_17 | 19191 | 20786 | - | HTH_AraC |
| TC | HRGMv2_3194_8 | HRGMv2_3194_8_18 | 20783 | 22486 | - | 8.A.59.2.1 |
| CAZyme | HRGMv2_3194_8 | HRGMv2_3194_8_19 | 22569 | 24251 | - | PL37 |
| CAZyme | HRGMv2_3194_8 | HRGMv2_3194_8_20 | 24211 | 25944 | - | GH3 |
| TC | HRGMv2_3194_8 | HRGMv2_3194_8_21 | 26003 | 26848 | - | 3.A.1.1.18 |
| TC | HRGMv2_3194_8 | HRGMv2_3194_8_22 | 26861 | 27778 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_3194_8_16
Type: CAZyme
Location: 18085 - 19194 (-)
Type: CAZyme
Location: 18085 - 19194 (-)
Gene ID: HRGMv2_3194_8_17
Type: TF
Location: 19191 - 20786 (-)
Type: TF
Location: 19191 - 20786 (-)
Gene ID: HRGMv2_3194_8_18
Type: TC
Location: 20783 - 22486 (-)
Type: TC
Location: 20783 - 22486 (-)
Gene ID: HRGMv2_3194_8_19
Type: CAZyme
Location: 22569 - 24251 (-)
Type: CAZyme
Location: 22569 - 24251 (-)
Gene ID: HRGMv2_3194_8_20
Type: CAZyme
Location: 24211 - 25944 (-)
Type: CAZyme
Location: 24211 - 25944 (-)
Gene ID: HRGMv2_3194_8_21
Type: TC
Location: 26003 - 26848 (-)
Type: TC
Location: 26003 - 26848 (-)
Gene ID: HRGMv2_3194_8_22
Type: TC
Location: 26861 - 27778 (-)
Type: TC
Location: 26861 - 27778 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.