Cluster: HRGMv2_3194_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_04020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3194_7 | HRGMv2_3194_7_54 | 49468 | 52701 | - | CBM61 | CBM61 | GH53 |
| TC | HRGMv2_3194_7 | HRGMv2_3194_7_55 | 52724 | 53617 | - | 3.A.1.1.27 |
| TC | HRGMv2_3194_7 | HRGMv2_3194_7_56 | 53614 | 55065 | - | 3.A.1.1.27 |
| pfam | HRGMv2_3194_7 | HRGMv2_3194_7_57 | 55166 | 56431 | - | SBP_bac_1 | SBP_bac_8 |
| TF | HRGMv2_3194_7 | HRGMv2_3194_7_58 | 56744 | 57751 | - | LacI |
| CAZyme | HRGMv2_3194_7 | HRGMv2_3194_7_59 | 57935 | 59935 | - | GH42 |
| pfam | HRGMv2_3194_7 | HRGMv2_3194_7_60 | 60808 | 61620 | - | adh_short | KR | adh_short_C2 |
| pfam | HRGMv2_3194_7 | HRGMv2_3194_7_61 | 61656 | 62507 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_3194_7 | HRGMv2_3194_7_62 | 62511 | 64325 | - | CBM32 | GH43_28 |
| CAZyme | HRGMv2_3194_7 | HRGMv2_3194_7_63 | 64331 | 66514 | - | GH2 |
| TC | HRGMv2_3194_7 | HRGMv2_3194_7_64 | 66585 | 68072 | - | 2.A.2.3.5 |
| CAZyme | HRGMv2_3194_7 | HRGMv2_3194_7_65 | 68312 | 69613 | + | GH1 |
Gene ID: HRGMv2_3194_7_54
Type: CAZyme
Location: 49468 - 52701 (-)
Type: CAZyme
Location: 49468 - 52701 (-)
Gene ID: HRGMv2_3194_7_55
Type: TC
Location: 52724 - 53617 (-)
Type: TC
Location: 52724 - 53617 (-)
Gene ID: HRGMv2_3194_7_56
Type: TC
Location: 53614 - 55065 (-)
Type: TC
Location: 53614 - 55065 (-)
Gene ID: HRGMv2_3194_7_57
Type: pfam
Location: 55166 - 56431 (-)
Type: pfam
Location: 55166 - 56431 (-)
Gene ID: HRGMv2_3194_7_58
Type: TF
Location: 56744 - 57751 (-)
Type: TF
Location: 56744 - 57751 (-)
Gene ID: HRGMv2_3194_7_59
Type: CAZyme
Location: 57935 - 59935 (-)
Type: CAZyme
Location: 57935 - 59935 (-)
Gene ID: HRGMv2_3194_7_60
Type: pfam
Location: 60808 - 61620 (-)
Type: pfam
Location: 60808 - 61620 (-)
Gene ID: HRGMv2_3194_7_61
Type: pfam
Location: 61656 - 62507 (-)
Type: pfam
Location: 61656 - 62507 (-)
Gene ID: HRGMv2_3194_7_62
Type: CAZyme
Location: 62511 - 64325 (-)
Type: CAZyme
Location: 62511 - 64325 (-)
Gene ID: HRGMv2_3194_7_63
Type: CAZyme
Location: 64331 - 66514 (-)
Type: CAZyme
Location: 64331 - 66514 (-)
Gene ID: HRGMv2_3194_7_64
Type: TC
Location: 66585 - 68072 (-)
Type: TC
Location: 66585 - 68072 (-)
Gene ID: HRGMv2_3194_7_65
Type: CAZyme
Location: 68312 - 69613 (+)
Type: CAZyme
Location: 68312 - 69613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.