Cluster: HRGMv2_3194_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3194
- CGC Family ID: CGCFAM_02189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3194_6 | HRGMv2_3194_6_66 | 64478 | 65386 | + | 2.A.115.1.1 |
| TF | HRGMv2_3194_6 | HRGMv2_3194_6_67 | 65440 | 66186 | - | HTH_3 |
| peptidase | HRGMv2_3194_6 | HRGMv2_3194_6_68 | 66337 | 67734 | - | M18.UPW |
| CAZyme | HRGMv2_3194_6 | HRGMv2_3194_6_69 | 67800 | 68408 | - | GH23 |
Gene ID: HRGMv2_3194_6_66
Type: TC
Location: 64478 - 65386 (+)
Type: TC
Location: 64478 - 65386 (+)
Gene ID: HRGMv2_3194_6_67
Type: TF
Location: 65440 - 66186 (-)
Type: TF
Location: 65440 - 66186 (-)
Gene ID: HRGMv2_3194_6_68
Type: peptidase
Location: 66337 - 67734 (-)
Type: peptidase
Location: 66337 - 67734 (-)
Gene ID: HRGMv2_3194_6_69
Type: CAZyme
Location: 67800 - 68408 (-)
Type: CAZyme
Location: 67800 - 68408 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.