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Cluster: HRGMv2_3190_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3190_5 HRGMv2_3190_5_37 41736 43925 - GH65
CAZyme HRGMv2_3190_5 HRGMv2_3190_5_38 44046 46352 - GH65
TC HRGMv2_3190_5 HRGMv2_3190_5_39 46766 47650 - 3.A.1.1.34
TC HRGMv2_3190_5 HRGMv2_3190_5_40 47665 48582 - 3.A.1.1.20
STP HRGMv2_3190_5 HRGMv2_3190_5_41 48713 50140 - SBP_bac_1
NULL(UNKNOWN) HRGMv2_3190_5 HRGMv2_3190_5_42 50461 51441 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3190_5 HRGMv2_3190_5_43 51427 53247 - 8.A.59.2.1
TF HRGMv2_3190_5 HRGMv2_3190_5_44 53260 54525 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3190_5 HRGMv2_3190_5_45 54901 56481 + GH28
pfam HRGMv2_3190_5 HRGMv2_3190_5_46 56509 57141 + F5_F8_type_C | F5_F8_type_C_2
CAZyme HRGMv2_3190_5 HRGMv2_3190_5_47 57724 60501 - GT2 | GT2
Gene ID: HRGMv2_3190_5_37
Type: CAZyme
Location: 41736 - 43925 (-)
Gene ID: HRGMv2_3190_5_38
Type: CAZyme
Location: 44046 - 46352 (-)
Gene ID: HRGMv2_3190_5_39
Type: TC
Location: 46766 - 47650 (-)
Gene ID: HRGMv2_3190_5_40
Type: TC
Location: 47665 - 48582 (-)
Gene ID: HRGMv2_3190_5_41
Type: STP
Location: 48713 - 50140 (-)
Gene ID: HRGMv2_3190_5_42
Type:
Location: 50461 - 51441 (+)
Gene ID: HRGMv2_3190_5_43
Type: TC
Location: 51427 - 53247 (-)
Gene ID: HRGMv2_3190_5_44
Type: TF
Location: 53260 - 54525 (-)
Gene ID: HRGMv2_3190_5_45
Type: CAZyme
Location: 54901 - 56481 (+)
Gene ID: HRGMv2_3190_5_46
Type: pfam
Location: 56509 - 57141 (+)
Gene ID: HRGMv2_3190_5_47
Type: CAZyme
Location: 57724 - 60501 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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