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Cluster: HRGMv2_3189_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3189_8 HRGMv2_3189_8_44 52106 53845 - GH36
TF HRGMv2_3189_8 HRGMv2_3189_8_45 54087 54935 + HTH_AraC | HTH_AraC
pfam HRGMv2_3189_8 HRGMv2_3189_8_46 54992 55792 + NAGLU | NAGLU_N
CAZyme HRGMv2_3189_8 HRGMv2_3189_8_47 55749 57113 + GH89
NULL(UNKNOWN) HRGMv2_3189_8 HRGMv2_3189_8_48 57149 59224 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3189_8 HRGMv2_3189_8_49 59933 61594 + ILVD_EDD_N | ILV_EDD_C
TC HRGMv2_3189_8 HRGMv2_3189_8_50 61654 62490 + 3.A.1.103.1
Gene ID: HRGMv2_3189_8_44
Type: CAZyme
Location: 52106 - 53845 (-)
Gene ID: HRGMv2_3189_8_45
Type: TF
Location: 54087 - 54935 (+)
Gene ID: HRGMv2_3189_8_46
Type: pfam
Location: 54992 - 55792 (+)
Gene ID: HRGMv2_3189_8_47
Type: CAZyme
Location: 55749 - 57113 (+)
Gene ID: HRGMv2_3189_8_48
Type:
Location: 57149 - 59224 (+)
Gene ID: HRGMv2_3189_8_49
Type: pfam
Location: 59933 - 61594 (+)
Gene ID: HRGMv2_3189_8_50
Type: TC
Location: 61654 - 62490 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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