Cluster: HRGMv2_3185_CGC52
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_06206
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3185_33 | HRGMv2_3185_33_4 | 4771 | 5958 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_3185_33 | HRGMv2_3185_33_5 | 5993 | 6940 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3185_33 | HRGMv2_3185_33_6 | 6956 | 8374 | - | 2.A.50.2.1 |
| CAZyme | HRGMv2_3185_33 | HRGMv2_3185_33_7 | 8535 | 9119 | - | CBM13 |
| pfam | HRGMv2_3185_33 | HRGMv2_3185_33_8 | 9414 | 9818 | + | MGS |
| pfam | HRGMv2_3185_33 | HRGMv2_3185_33_9 | 9948 | 10598 | + | YitT_membrane |
| TC | HRGMv2_3185_33 | HRGMv2_3185_33_10 | 10600 | 11283 | - | 9.B.143.2.3 |
Gene ID: HRGMv2_3185_33_4
Type: TC
Location: 4771 - 5958 (-)
Type: TC
Location: 4771 - 5958 (-)
Gene ID: HRGMv2_3185_33_5
Type:
Location: 5993 - 6940 (-)
Type:
Location: 5993 - 6940 (-)
Gene ID: HRGMv2_3185_33_6
Type: TC
Location: 6956 - 8374 (-)
Type: TC
Location: 6956 - 8374 (-)
Gene ID: HRGMv2_3185_33_7
Type: CAZyme
Location: 8535 - 9119 (-)
Type: CAZyme
Location: 8535 - 9119 (-)
Gene ID: HRGMv2_3185_33_8
Type: pfam
Location: 9414 - 9818 (+)
Type: pfam
Location: 9414 - 9818 (+)
Gene ID: HRGMv2_3185_33_9
Type: pfam
Location: 9948 - 10598 (+)
Type: pfam
Location: 9948 - 10598 (+)
Gene ID: HRGMv2_3185_33_10
Type: TC
Location: 10600 - 11283 (-)
Type: TC
Location: 10600 - 11283 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.