Cluster: HRGMv2_3185_CGC50
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_00100
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3185_27 | HRGMv2_3185_27_1 | 1 | 702 | + | 3.A.2.1.5 |
| pfam | HRGMv2_3185_27 | HRGMv2_3185_27_2 | 699 | 1100 | + | ATP-synt_DE | ATP-synt_DE_N |
| CAZyme | HRGMv2_3185_27 | HRGMv2_3185_27_3 | 1174 | 3012 | - | GT2 |
| pfam | HRGMv2_3185_27 | HRGMv2_3185_27_4 | 3019 | 3267 | - | FakA-like_M |
| CAZyme | HRGMv2_3185_27 | HRGMv2_3185_27_5 | 3279 | 5147 | - | GT2 | GT2 |
| TC | HRGMv2_3185_27 | HRGMv2_3185_27_6 | 5172 | 5942 | - | 3.A.1.103.1 |
| TC | HRGMv2_3185_27 | HRGMv2_3185_27_7 | 5957 | 6757 | - | 3.A.1.103.6 |
Gene ID: HRGMv2_3185_27_1
Type: TC
Location: 1 - 702 (+)
Type: TC
Location: 1 - 702 (+)
Gene ID: HRGMv2_3185_27_2
Type: pfam
Location: 699 - 1100 (+)
Type: pfam
Location: 699 - 1100 (+)
Gene ID: HRGMv2_3185_27_3
Type: CAZyme
Location: 1174 - 3012 (-)
Type: CAZyme
Location: 1174 - 3012 (-)
Gene ID: HRGMv2_3185_27_4
Type: pfam
Location: 3019 - 3267 (-)
Type: pfam
Location: 3019 - 3267 (-)
Gene ID: HRGMv2_3185_27_5
Type: CAZyme
Location: 3279 - 5147 (-)
Type: CAZyme
Location: 3279 - 5147 (-)
Gene ID: HRGMv2_3185_27_6
Type: TC
Location: 5172 - 5942 (-)
Type: TC
Location: 5172 - 5942 (-)
Gene ID: HRGMv2_3185_27_7
Type: TC
Location: 5957 - 6757 (-)
Type: TC
Location: 5957 - 6757 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.