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Cluster: HRGMv2_3185_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3185_17 HRGMv2_3185_17_30 38422 40674 - GH3
TF HRGMv2_3185_17 HRGMv2_3185_17_31 40697 42112 - HTH_AraC
TC HRGMv2_3185_17 HRGMv2_3185_17_32 42109 43869 - 9.B.33.1.1
STP HRGMv2_3185_17 HRGMv2_3185_17_33 43878 45431 - SBP_bac_1
TC HRGMv2_3185_17 HRGMv2_3185_17_34 45501 46346 - 3.A.1.1.48
TC HRGMv2_3185_17 HRGMv2_3185_17_35 46350 47282 - 3.A.1.1.4
STP HRGMv2_3185_17 HRGMv2_3185_17_36 47361 48674 - SBP_bac_1
CAZyme HRGMv2_3185_17 HRGMv2_3185_17_37 48852 50183 - GH30_1
CAZyme HRGMv2_3185_17 HRGMv2_3185_17_38 50180 53266 - GH161
CAZyme HRGMv2_3185_17 HRGMv2_3185_17_39 53288 55939 - GH94
Gene ID: HRGMv2_3185_17_30
Type: CAZyme
Location: 38422 - 40674 (-)
Gene ID: HRGMv2_3185_17_31
Type: TF
Location: 40697 - 42112 (-)
Gene ID: HRGMv2_3185_17_32
Type: TC
Location: 42109 - 43869 (-)
Gene ID: HRGMv2_3185_17_33
Type: STP
Location: 43878 - 45431 (-)
Gene ID: HRGMv2_3185_17_34
Type: TC
Location: 45501 - 46346 (-)
Gene ID: HRGMv2_3185_17_35
Type: TC
Location: 46350 - 47282 (-)
Gene ID: HRGMv2_3185_17_36
Type: STP
Location: 47361 - 48674 (-)
Gene ID: HRGMv2_3185_17_37
Type: CAZyme
Location: 48852 - 50183 (-)
Gene ID: HRGMv2_3185_17_38
Type: CAZyme
Location: 50180 - 53266 (-)
Gene ID: HRGMv2_3185_17_39
Type: CAZyme
Location: 53288 - 55939 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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