Cluster: HRGMv2_3185_CGC4
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3185
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_99 | 131319 | 133022 | - | 3.A.1.32.3 |
| NULL(UNKNOWN) | HRGMv2_3185_1 | HRGMv2_3185_1_100 | 133029 | 133862 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3185_1 | HRGMv2_3185_1_101 | 134109 | 135257 | + | Gly_kinase |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_102 | 135338 | 137389 | + | GH35 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_103 | 137462 | 140110 | + | GH2 |
| STP | HRGMv2_3185_1 | HRGMv2_3185_1_104 | 140473 | 141792 | + | SBP_bac_1 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_105 | 141879 | 142802 | + | 3.A.1.1.11 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_106 | 142816 | 143649 | + | 3.A.1.1.36 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_107 | 143726 | 144874 | + | GH88 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_108 | 144891 | 146855 | + | PL12_1 |
| TF | HRGMv2_3185_1 | HRGMv2_3185_1_109 | 146919 | 148532 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_110 | 148537 | 150258 | - | 8.A.59.2.1 |
| pfam | HRGMv2_3185_1 | HRGMv2_3185_1_111 | 150612 | 150848 | + | NifU |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_112 | 150866 | 153910 | + | GH38 |
| STP | HRGMv2_3185_1 | HRGMv2_3185_1_113 | 154231 | 155640 | + | SBP_bac_1 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_114 | 155809 | 156738 | + | 3.A.1.1.28 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_115 | 156753 | 157625 | + | 3.A.1.1.11 |
| TF | HRGMv2_3185_1 | HRGMv2_3185_1_116 | 157761 | 159344 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_117 | 159357 | 161162 | + | 8.A.59.2.1 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_118 | 161220 | 162791 | - | GH28 |
Gene ID: HRGMv2_3185_1_99
Type: TC
Location: 131319 - 133022 (-)
Type: TC
Location: 131319 - 133022 (-)
Gene ID: HRGMv2_3185_1_100
Type:
Location: 133029 - 133862 (-)
Type:
Location: 133029 - 133862 (-)
Gene ID: HRGMv2_3185_1_101
Type: pfam
Location: 134109 - 135257 (+)
Type: pfam
Location: 134109 - 135257 (+)
Gene ID: HRGMv2_3185_1_102
Type: CAZyme
Location: 135338 - 137389 (+)
Type: CAZyme
Location: 135338 - 137389 (+)
Gene ID: HRGMv2_3185_1_103
Type: CAZyme
Location: 137462 - 140110 (+)
Type: CAZyme
Location: 137462 - 140110 (+)
Gene ID: HRGMv2_3185_1_104
Type: STP
Location: 140473 - 141792 (+)
Type: STP
Location: 140473 - 141792 (+)
Gene ID: HRGMv2_3185_1_105
Type: TC
Location: 141879 - 142802 (+)
Type: TC
Location: 141879 - 142802 (+)
Gene ID: HRGMv2_3185_1_106
Type: TC
Location: 142816 - 143649 (+)
Type: TC
Location: 142816 - 143649 (+)
Gene ID: HRGMv2_3185_1_107
Type: CAZyme
Location: 143726 - 144874 (+)
Type: CAZyme
Location: 143726 - 144874 (+)
Gene ID: HRGMv2_3185_1_108
Type: CAZyme
Location: 144891 - 146855 (+)
Type: CAZyme
Location: 144891 - 146855 (+)
Gene ID: HRGMv2_3185_1_109
Type: TF
Location: 146919 - 148532 (-)
Type: TF
Location: 146919 - 148532 (-)
Gene ID: HRGMv2_3185_1_110
Type: TC
Location: 148537 - 150258 (-)
Type: TC
Location: 148537 - 150258 (-)
Gene ID: HRGMv2_3185_1_111
Type: pfam
Location: 150612 - 150848 (+)
Type: pfam
Location: 150612 - 150848 (+)
Gene ID: HRGMv2_3185_1_112
Type: CAZyme
Location: 150866 - 153910 (+)
Type: CAZyme
Location: 150866 - 153910 (+)
Gene ID: HRGMv2_3185_1_113
Type: STP
Location: 154231 - 155640 (+)
Type: STP
Location: 154231 - 155640 (+)
Gene ID: HRGMv2_3185_1_114
Type: TC
Location: 155809 - 156738 (+)
Type: TC
Location: 155809 - 156738 (+)
Gene ID: HRGMv2_3185_1_115
Type: TC
Location: 156753 - 157625 (+)
Type: TC
Location: 156753 - 157625 (+)
Gene ID: HRGMv2_3185_1_116
Type: TF
Location: 157761 - 159344 (+)
Type: TF
Location: 157761 - 159344 (+)
Gene ID: HRGMv2_3185_1_117
Type: TC
Location: 159357 - 161162 (+)
Type: TC
Location: 159357 - 161162 (+)
Gene ID: HRGMv2_3185_1_118
Type: CAZyme
Location: 161220 - 162791 (-)
Type: CAZyme
Location: 161220 - 162791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.