dbCAN Logo

Cluster: HRGMv2_3185_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3185_14 HRGMv2_3185_14_3 2029 2961 - 3.A.1.1.29
TC HRGMv2_3185_14 HRGMv2_3185_14_4 2979 3926 - 3.A.1.1.10
TF HRGMv2_3185_14 HRGMv2_3185_14_5 4296 5225 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_3185_14 HRGMv2_3185_14_6 5263 6606 + GH28
NULL(UNKNOWN) HRGMv2_3185_14 HRGMv2_3185_14_7 6603 7298 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_3185_14 HRGMv2_3185_14_8 7464 8210 + Peptidase_M23
TC HRGMv2_3185_14 HRGMv2_3185_14_9 8277 10142 - 3.A.3.6.10
Gene ID: HRGMv2_3185_14_3
Type: TC
Location: 2029 - 2961 (-)
Gene ID: HRGMv2_3185_14_4
Type: TC
Location: 2979 - 3926 (-)
Gene ID: HRGMv2_3185_14_5
Type: TF
Location: 4296 - 5225 (+)
Gene ID: HRGMv2_3185_14_6
Type: CAZyme
Location: 5263 - 6606 (+)
Gene ID: HRGMv2_3185_14_7
Type:
Location: 6603 - 7298 (+)
Gene ID: HRGMv2_3185_14_8
Type: STP
Location: 7464 - 8210 (+)
Gene ID: HRGMv2_3185_14_9
Type: TC
Location: 8277 - 10142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3185_14_4 vegan > omnivore 2.07835 0.00290
HRGMv2_3185_14_6 vegan > omnivore 1.01811 0.00290
HRGMv2_3185_14_6 vegetarian > omnivore 1.60368 0.01873

🧭 Explore Read Mapping of CGC

← Back to Cluster List