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Cluster: HRGMv2_3185_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3185_12 HRGMv2_3185_12_2 548 1525 - CE8
pfam HRGMv2_3185_12 HRGMv2_3185_12_3 1530 2363 - AP_endonuc_2
CAZyme HRGMv2_3185_12 HRGMv2_3185_12_4 2397 3554 - GH105
CAZyme HRGMv2_3185_12 HRGMv2_3185_12_5 3575 5131 - GH28
TF HRGMv2_3185_12 HRGMv2_3185_12_6 5247 6113 + HTH_AraC | HTH_AraC
TC HRGMv2_3185_12 HRGMv2_3185_12_7 6316 7182 - 3.A.1.1.11
TC HRGMv2_3185_12 HRGMv2_3185_12_8 7204 8112 - 3.A.1.1.11
TC HRGMv2_3185_12 HRGMv2_3185_12_9 8292 9647 - 3.A.1.1.11
Gene ID: HRGMv2_3185_12_2
Type: CAZyme
Location: 548 - 1525 (-)
Gene ID: HRGMv2_3185_12_3
Type: pfam
Location: 1530 - 2363 (-)
Gene ID: HRGMv2_3185_12_4
Type: CAZyme
Location: 2397 - 3554 (-)
Gene ID: HRGMv2_3185_12_5
Type: CAZyme
Location: 3575 - 5131 (-)
Gene ID: HRGMv2_3185_12_6
Type: TF
Location: 5247 - 6113 (+)
Gene ID: HRGMv2_3185_12_7
Type: TC
Location: 6316 - 7182 (-)
Gene ID: HRGMv2_3185_12_8
Type: TC
Location: 7204 - 8112 (-)
Gene ID: HRGMv2_3185_12_9
Type: TC
Location: 8292 - 9647 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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