Cluster: HRGMv2_3185_CGC3
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate: beta-mannan
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_00226
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_66 | 91969 | 94221 | - | GH3 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_67 | 94436 | 95797 | - | GH1 |
| pfam | HRGMv2_3185_1 | HRGMv2_3185_1_68 | 95800 | 97476 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_69 | 97511 | 98200 | - | CE2 |
| NULL(UNKNOWN) | HRGMv2_3185_1 | HRGMv2_3185_1_70 | 98240 | 98599 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3185_1 | HRGMv2_3185_1_71 | 98808 | 99794 | + | LacI |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_72 | 100053 | 101429 | + | 3.A.1.1.44 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_73 | 101528 | 102535 | + | 3.A.1.1.28 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_74 | 102550 | 103416 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_75 | 103520 | 104539 | + | GH130_2 |
| pfam | HRGMv2_3185_1 | HRGMv2_3185_1_76 | 104556 | 105734 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_77 | 105721 | 106911 | + | GH130_1 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_78 | 106913 | 108430 | + | CE20 |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_79 | 108448 | 109083 | + | 9.B.28.1.2 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_80 | 109177 | 111327 | + | GH36 |
| CAZyme | HRGMv2_3185_1 | HRGMv2_3185_1_81 | 111332 | 112240 | + | GH113 |
| NULL(UNKNOWN) | HRGMv2_3185_1 | HRGMv2_3185_1_82 | 112335 | 114737 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3185_1 | HRGMv2_3185_1_83 | 114734 | 115510 | - | 3.A.1.148.2 |
Gene ID: HRGMv2_3185_1_66
Type: CAZyme
Location: 91969 - 94221 (-)
Type: CAZyme
Location: 91969 - 94221 (-)
Gene ID: HRGMv2_3185_1_67
Type: CAZyme
Location: 94436 - 95797 (-)
Type: CAZyme
Location: 94436 - 95797 (-)
Gene ID: HRGMv2_3185_1_68
Type: pfam
Location: 95800 - 97476 (-)
Type: pfam
Location: 95800 - 97476 (-)
Gene ID: HRGMv2_3185_1_69
Type: CAZyme
Location: 97511 - 98200 (-)
Type: CAZyme
Location: 97511 - 98200 (-)
Gene ID: HRGMv2_3185_1_70
Type:
Location: 98240 - 98599 (-)
Type:
Location: 98240 - 98599 (-)
Gene ID: HRGMv2_3185_1_71
Type: TF
Location: 98808 - 99794 (+)
Type: TF
Location: 98808 - 99794 (+)
Gene ID: HRGMv2_3185_1_72
Type: TC
Location: 100053 - 101429 (+)
Type: TC
Location: 100053 - 101429 (+)
Gene ID: HRGMv2_3185_1_73
Type: TC
Location: 101528 - 102535 (+)
Type: TC
Location: 101528 - 102535 (+)
Gene ID: HRGMv2_3185_1_74
Type: TC
Location: 102550 - 103416 (+)
Type: TC
Location: 102550 - 103416 (+)
Gene ID: HRGMv2_3185_1_75
Type: CAZyme
Location: 103520 - 104539 (+)
Type: CAZyme
Location: 103520 - 104539 (+)
Gene ID: HRGMv2_3185_1_76
Type: pfam
Location: 104556 - 105734 (+)
Type: pfam
Location: 104556 - 105734 (+)
Gene ID: HRGMv2_3185_1_77
Type: CAZyme
Location: 105721 - 106911 (+)
Type: CAZyme
Location: 105721 - 106911 (+)
Gene ID: HRGMv2_3185_1_78
Type: CAZyme
Location: 106913 - 108430 (+)
Type: CAZyme
Location: 106913 - 108430 (+)
Gene ID: HRGMv2_3185_1_79
Type: TC
Location: 108448 - 109083 (+)
Type: TC
Location: 108448 - 109083 (+)
Gene ID: HRGMv2_3185_1_80
Type: CAZyme
Location: 109177 - 111327 (+)
Type: CAZyme
Location: 109177 - 111327 (+)
Gene ID: HRGMv2_3185_1_81
Type: CAZyme
Location: 111332 - 112240 (+)
Type: CAZyme
Location: 111332 - 112240 (+)
Gene ID: HRGMv2_3185_1_82
Type:
Location: 112335 - 114737 (-)
Type:
Location: 112335 - 114737 (-)
Gene ID: HRGMv2_3185_1_83
Type: TC
Location: 114734 - 115510 (-)
Type: TC
Location: 114734 - 115510 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.