Cluster: HRGMv2_3185_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_00389
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3185_9 | HRGMv2_3185_9_43 | 58431 | 59870 | - | GH1 |
| CAZyme | HRGMv2_3185_9 | HRGMv2_3185_9_44 | 59867 | 62572 | - | GH106 |
| TC | HRGMv2_3185_9 | HRGMv2_3185_9_45 | 62679 | 64073 | - | 4.A.1.2.2 |
| TF | HRGMv2_3185_9 | HRGMv2_3185_9_46 | 64269 | 65306 | + | HTH_AraC |
| TC | HRGMv2_3185_9 | HRGMv2_3185_9_47 | 65370 | 66446 | - | 9.A.28.1.2 |
Gene ID: HRGMv2_3185_9_43
Type: CAZyme
Location: 58431 - 59870 (-)
Type: CAZyme
Location: 58431 - 59870 (-)
Gene ID: HRGMv2_3185_9_44
Type: CAZyme
Location: 59867 - 62572 (-)
Type: CAZyme
Location: 59867 - 62572 (-)
Gene ID: HRGMv2_3185_9_45
Type: TC
Location: 62679 - 64073 (-)
Type: TC
Location: 62679 - 64073 (-)
Gene ID: HRGMv2_3185_9_46
Type: TF
Location: 64269 - 65306 (+)
Type: TF
Location: 64269 - 65306 (+)
Gene ID: HRGMv2_3185_9_47
Type: TC
Location: 65370 - 66446 (-)
Type: TC
Location: 65370 - 66446 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.