Cluster: HRGMv2_3185_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3185
- CGC Family ID: CGCFAM_08335
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3185_9 | HRGMv2_3185_9_9 | 17942 | 18808 | - | 3.A.1.1.11 |
| TC | HRGMv2_3185_9 | HRGMv2_3185_9_10 | 18813 | 19736 | - | 3.A.1.1.11 |
| TC | HRGMv2_3185_9 | HRGMv2_3185_9_11 | 19886 | 21247 | - | 3.A.1.1.40 |
| TF | HRGMv2_3185_9 | HRGMv2_3185_9_12 | 21438 | 22481 | - | HTH_AraC |
| STP | HRGMv2_3185_9 | HRGMv2_3185_9_13 | 22514 | 24247 | - | HATPase_c |
| CAZyme | HRGMv2_3185_9 | HRGMv2_3185_9_14 | 24532 | 27630 | + | GH38 |
Gene ID: HRGMv2_3185_9_9
Type: TC
Location: 17942 - 18808 (-)
Type: TC
Location: 17942 - 18808 (-)
Gene ID: HRGMv2_3185_9_10
Type: TC
Location: 18813 - 19736 (-)
Type: TC
Location: 18813 - 19736 (-)
Gene ID: HRGMv2_3185_9_11
Type: TC
Location: 19886 - 21247 (-)
Type: TC
Location: 19886 - 21247 (-)
Gene ID: HRGMv2_3185_9_12
Type: TF
Location: 21438 - 22481 (-)
Type: TF
Location: 21438 - 22481 (-)
Gene ID: HRGMv2_3185_9_13
Type: STP
Location: 22514 - 24247 (-)
Type: STP
Location: 22514 - 24247 (-)
Gene ID: HRGMv2_3185_9_14
Type: CAZyme
Location: 24532 - 27630 (+)
Type: CAZyme
Location: 24532 - 27630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp905214345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.