Cluster: HRGMv2_3177_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3177
- CGC Family ID: CGCFAM_05223
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3177_15 | HRGMv2_3177_15_28 | 30448 | 31038 | + | 4.F.1.1.7 |
| pfam | HRGMv2_3177_15 | HRGMv2_3177_15_29 | 31076 | 31741 | + | Hexapep | SATase_N |
| pfam | HRGMv2_3177_15 | HRGMv2_3177_15_30 | 31746 | 33143 | + | tRNA-synt_1e | CysS_C |
| CAZyme | HRGMv2_3177_15 | HRGMv2_3177_15_31 | 33214 | 34002 | + | CE4 |
| pfam | HRGMv2_3177_15 | HRGMv2_3177_15_32 | 34073 | 34261 | - | Ribosomal_L28 |
| TC | HRGMv2_3177_15 | HRGMv2_3177_15_33 | 34533 | 35219 | + | 9.B.149.1.11 |
Gene ID: HRGMv2_3177_15_28
Type: TC
Location: 30448 - 31038 (+)
Type: TC
Location: 30448 - 31038 (+)
Gene ID: HRGMv2_3177_15_29
Type: pfam
Location: 31076 - 31741 (+)
Type: pfam
Location: 31076 - 31741 (+)
Gene ID: HRGMv2_3177_15_30
Type: pfam
Location: 31746 - 33143 (+)
Type: pfam
Location: 31746 - 33143 (+)
Gene ID: HRGMv2_3177_15_31
Type: CAZyme
Location: 33214 - 34002 (+)
Type: CAZyme
Location: 33214 - 34002 (+)
Gene ID: HRGMv2_3177_15_32
Type: pfam
Location: 34073 - 34261 (-)
Type: pfam
Location: 34073 - 34261 (-)
Gene ID: HRGMv2_3177_15_33
Type: TC
Location: 34533 - 35219 (+)
Type: TC
Location: 34533 - 35219 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3177_15_32 | vegetarian > omnivore | 1.96855 | 0.01232 |