Cluster: HRGMv2_3177_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3177
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3177_13 | HRGMv2_3177_13_16 | 14894 | 18073 | - | GH13_14 |
| CAZyme | HRGMv2_3177_13 | HRGMv2_3177_13_17 | 18173 | 21058 | - | GH13_14 |
| CAZyme | HRGMv2_3177_13 | HRGMv2_3177_13_18 | 21278 | 21583 | + | CBM50 |
| pfam | HRGMv2_3177_13 | HRGMv2_3177_13_19 | 21684 | 22535 | - | ABC-3 |
| TC | HRGMv2_3177_13 | HRGMv2_3177_13_20 | 22528 | 23241 | - | 3.A.1.15.4 |
| TC | HRGMv2_3177_13 | HRGMv2_3177_13_21 | 23251 | 24207 | - | 3.A.1.15.3 |
Gene ID: HRGMv2_3177_13_16
Type: CAZyme
Location: 14894 - 18073 (-)
Type: CAZyme
Location: 14894 - 18073 (-)
Gene ID: HRGMv2_3177_13_17
Type: CAZyme
Location: 18173 - 21058 (-)
Type: CAZyme
Location: 18173 - 21058 (-)
Gene ID: HRGMv2_3177_13_18
Type: CAZyme
Location: 21278 - 21583 (+)
Type: CAZyme
Location: 21278 - 21583 (+)
Gene ID: HRGMv2_3177_13_19
Type: pfam
Location: 21684 - 22535 (-)
Type: pfam
Location: 21684 - 22535 (-)
Gene ID: HRGMv2_3177_13_20
Type: TC
Location: 22528 - 23241 (-)
Type: TC
Location: 22528 - 23241 (-)
Gene ID: HRGMv2_3177_13_21
Type: TC
Location: 23251 - 24207 (-)
Type: TC
Location: 23251 - 24207 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.