Cluster: HRGMv2_3177_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3177
- CGC Family ID: CGCFAM_10323
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3177_2 | HRGMv2_3177_2_52 | 65244 | 67283 | + | 3.A.16.1.2 |
| pfam | HRGMv2_3177_2 | HRGMv2_3177_2_53 | 67563 | 70382 | + | UvrA_DNA-bind | UvrA_inter |
| NULL(UNKNOWN) | HRGMv2_3177_2 | HRGMv2_3177_2_54 | 70621 | 70875 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3177_2 | HRGMv2_3177_2_55 | 71109 | 72617 | + | GH25 |
| pfam | HRGMv2_3177_2 | HRGMv2_3177_2_56 | 72696 | 73535 | - | HAD |
| TC | HRGMv2_3177_2 | HRGMv2_3177_2_57 | 73569 | 74603 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_3177_2_52
Type: TC
Location: 65244 - 67283 (+)
Type: TC
Location: 65244 - 67283 (+)
Gene ID: HRGMv2_3177_2_53
Type: pfam
Location: 67563 - 70382 (+)
Type: pfam
Location: 67563 - 70382 (+)
Gene ID: HRGMv2_3177_2_54
Type:
Location: 70621 - 70875 (+)
Type:
Location: 70621 - 70875 (+)
Gene ID: HRGMv2_3177_2_55
Type: CAZyme
Location: 71109 - 72617 (+)
Type: CAZyme
Location: 71109 - 72617 (+)
Gene ID: HRGMv2_3177_2_56
Type: pfam
Location: 72696 - 73535 (-)
Type: pfam
Location: 72696 - 73535 (-)
Gene ID: HRGMv2_3177_2_57
Type: TC
Location: 73569 - 74603 (-)
Type: TC
Location: 73569 - 74603 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.