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Cluster: HRGMv2_3177_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3177_19 HRGMv2_3177_19_2 1370 5926 - GH13_19
TF HRGMv2_3177_19 HRGMv2_3177_19_3 6213 6995 - HTH_3
pfam HRGMv2_3177_19 HRGMv2_3177_19_4 7147 7680 - PAP2 | PAP2_3
TC HRGMv2_3177_19 HRGMv2_3177_19_5 7796 8806 - 9.A.11.1.1
pfam HRGMv2_3177_19 HRGMv2_3177_19_6 8865 10499 - VanW | PG_binding_4
CAZyme HRGMv2_3177_19 HRGMv2_3177_19_7 10796 11923 + GT28
STP HRGMv2_3177_19 HRGMv2_3177_19_8 11974 14289 - SpoIIE
pfam HRGMv2_3177_19 HRGMv2_3177_19_9 14536 14958 + RuvX
CAZyme HRGMv2_3177_19 HRGMv2_3177_19_10 15090 16517 - GT5
pfam HRGMv2_3177_19 HRGMv2_3177_19_11 16533 17642 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_3177_19 HRGMv2_3177_19_12 17632 18843 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_3177_19 HRGMv2_3177_19_13 18978 20876 - GH13_9
Gene ID: HRGMv2_3177_19_2
Type: CAZyme
Location: 1370 - 5926 (-)
Gene ID: HRGMv2_3177_19_3
Type: TF
Location: 6213 - 6995 (-)
Gene ID: HRGMv2_3177_19_4
Type: pfam
Location: 7147 - 7680 (-)
Gene ID: HRGMv2_3177_19_5
Type: TC
Location: 7796 - 8806 (-)
Gene ID: HRGMv2_3177_19_6
Type: pfam
Location: 8865 - 10499 (-)
Gene ID: HRGMv2_3177_19_7
Type: CAZyme
Location: 10796 - 11923 (+)
Gene ID: HRGMv2_3177_19_8
Type: STP
Location: 11974 - 14289 (-)
Gene ID: HRGMv2_3177_19_9
Type: pfam
Location: 14536 - 14958 (+)
Gene ID: HRGMv2_3177_19_10
Type: CAZyme
Location: 15090 - 16517 (-)
Gene ID: HRGMv2_3177_19_11
Type: pfam
Location: 16533 - 17642 (-)
Gene ID: HRGMv2_3177_19_12
Type: pfam
Location: 17632 - 18843 (-)
Gene ID: HRGMv2_3177_19_13
Type: CAZyme
Location: 18978 - 20876 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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