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Cluster: HRGMv2_3177_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3177_18 HRGMv2_3177_18_6 7843 8547 - 3.A.1.24.5
TC HRGMv2_3177_18 HRGMv2_3177_18_7 8547 9545 - 3.A.1.24.2
TC HRGMv2_3177_18 HRGMv2_3177_18_8 9574 10476 - 3.A.1.24.5
STP HRGMv2_3177_18 HRGMv2_3177_18_9 10795 12189 - Pyr_redox_2
pfam HRGMv2_3177_18 HRGMv2_3177_18_10 12191 13033 - DHODB_Fe-S_bind
CAZyme HRGMv2_3177_18 HRGMv2_3177_18_11 13311 15557 - GH13_42
pfam HRGMv2_3177_18 HRGMv2_3177_18_12 15793 16641 - S6PP | Hydrolase_3
CAZyme HRGMv2_3177_18 HRGMv2_3177_18_13 16856 17605 + CBM21
CAZyme HRGMv2_3177_18 HRGMv2_3177_18_14 17916 18665 + CBM21
pfam HRGMv2_3177_18 HRGMv2_3177_18_15 18737 19060 - DNA_binding_1
TC HRGMv2_3177_18 HRGMv2_3177_18_16 19063 19893 - 3.D.6.1.3
TC HRGMv2_3177_18 HRGMv2_3177_18_17 19909 20499 - 3.D.6.1.2
TC HRGMv2_3177_18 HRGMv2_3177_18_18 20496 21170 - 3.D.6.1.2
TC HRGMv2_3177_18 HRGMv2_3177_18_19 21170 21706 - 3.D.6.1.3
TC HRGMv2_3177_18 HRGMv2_3177_18_20 21703 22623 - 3.D.6.1.2
TC HRGMv2_3177_18 HRGMv2_3177_18_21 22620 23942 - 3.D.6.1.2
TF HRGMv2_3177_18 HRGMv2_3177_18_22 24198 24905 + Crp
TC HRGMv2_3177_18 HRGMv2_3177_18_23 25098 25829 + 2.A.78.1.1
TC HRGMv2_3177_18 HRGMv2_3177_18_24 25822 26154 + 2.A.78.1.1
TC HRGMv2_3177_18 HRGMv2_3177_18_25 26167 26730 + 2.A.107.1.2
NULL(UNKNOWN) HRGMv2_3177_18 HRGMv2_3177_18_26 26837 27166 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3177_18 HRGMv2_3177_18_27 27216 28040 - 3.A.1.132.3
Gene ID: HRGMv2_3177_18_6
Type: TC
Location: 7843 - 8547 (-)
Gene ID: HRGMv2_3177_18_7
Type: TC
Location: 8547 - 9545 (-)
Gene ID: HRGMv2_3177_18_8
Type: TC
Location: 9574 - 10476 (-)
Gene ID: HRGMv2_3177_18_9
Type: STP
Location: 10795 - 12189 (-)
Gene ID: HRGMv2_3177_18_10
Type: pfam
Location: 12191 - 13033 (-)
Gene ID: HRGMv2_3177_18_11
Type: CAZyme
Location: 13311 - 15557 (-)
Gene ID: HRGMv2_3177_18_12
Type: pfam
Location: 15793 - 16641 (-)
Gene ID: HRGMv2_3177_18_13
Type: CAZyme
Location: 16856 - 17605 (+)
Gene ID: HRGMv2_3177_18_14
Type: CAZyme
Location: 17916 - 18665 (+)
Gene ID: HRGMv2_3177_18_15
Type: pfam
Location: 18737 - 19060 (-)
Gene ID: HRGMv2_3177_18_16
Type: TC
Location: 19063 - 19893 (-)
Gene ID: HRGMv2_3177_18_17
Type: TC
Location: 19909 - 20499 (-)
Gene ID: HRGMv2_3177_18_18
Type: TC
Location: 20496 - 21170 (-)
Gene ID: HRGMv2_3177_18_19
Type: TC
Location: 21170 - 21706 (-)
Gene ID: HRGMv2_3177_18_20
Type: TC
Location: 21703 - 22623 (-)
Gene ID: HRGMv2_3177_18_21
Type: TC
Location: 22620 - 23942 (-)
Gene ID: HRGMv2_3177_18_22
Type: TF
Location: 24198 - 24905 (+)
Gene ID: HRGMv2_3177_18_23
Type: TC
Location: 25098 - 25829 (+)
Gene ID: HRGMv2_3177_18_24
Type: TC
Location: 25822 - 26154 (+)
Gene ID: HRGMv2_3177_18_25
Type: TC
Location: 26167 - 26730 (+)
Gene ID: HRGMv2_3177_18_26
Type:
Location: 26837 - 27166 (-)
Gene ID: HRGMv2_3177_18_27
Type: TC
Location: 27216 - 28040 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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