Cluster: HRGMv2_3177_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3177
- CGC Family ID: CGCFAM_02144
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3177_2 | HRGMv2_3177_2_19 | 24994 | 26013 | + | 3.A.1.141.1 |
| pfam | HRGMv2_3177_2 | HRGMv2_3177_2_20 | 25997 | 26815 | + | ABC2_membrane_6 |
| TC | HRGMv2_3177_2 | HRGMv2_3177_2_21 | 26818 | 27618 | + | 3.A.1.141.2 |
| CAZyme | HRGMv2_3177_2 | HRGMv2_3177_2_22 | 27921 | 31922 | + | GH13_14 |
Gene ID: HRGMv2_3177_2_19
Type: TC
Location: 24994 - 26013 (+)
Type: TC
Location: 24994 - 26013 (+)
Gene ID: HRGMv2_3177_2_20
Type: pfam
Location: 25997 - 26815 (+)
Type: pfam
Location: 25997 - 26815 (+)
Gene ID: HRGMv2_3177_2_21
Type: TC
Location: 26818 - 27618 (+)
Type: TC
Location: 26818 - 27618 (+)
Gene ID: HRGMv2_3177_2_22
Type: CAZyme
Location: 27921 - 31922 (+)
Type: CAZyme
Location: 27921 - 31922 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.