Cluster: HRGMv2_3176_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3176
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3176_2 | HRGMv2_3176_2_65 | 61075 | 62490 | - | GT2 |
| pfam | HRGMv2_3176_2 | HRGMv2_3176_2_66 | 62519 | 63295 | - | PHP |
| pfam | HRGMv2_3176_2 | HRGMv2_3176_2_67 | 63534 | 64667 | - | Radical_SAM |
| TC | HRGMv2_3176_2 | HRGMv2_3176_2_68 | 64888 | 76224 | - | 8.A.42.1.3 |
Gene ID: HRGMv2_3176_2_65
Type: CAZyme
Location: 61075 - 62490 (-)
Type: CAZyme
Location: 61075 - 62490 (-)
Gene ID: HRGMv2_3176_2_66
Type: pfam
Location: 62519 - 63295 (-)
Type: pfam
Location: 62519 - 63295 (-)
Gene ID: HRGMv2_3176_2_67
Type: pfam
Location: 63534 - 64667 (-)
Type: pfam
Location: 63534 - 64667 (-)
Gene ID: HRGMv2_3176_2_68
Type: TC
Location: 64888 - 76224 (-)
Type: TC
Location: 64888 - 76224 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp905199285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3176_2_66 | omnivore > vegan | 2.55440 | 0.02853 |
| HRGMv2_3176_2_67 | omnivore > vegan | 2.69216 | 0.02853 |