Cluster: HRGMv2_3176_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3176
- CGC Family ID: CGCFAM_01037
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3176_1 | HRGMv2_3176_1_282 | 342170 | 344812 | - | 9.B.74.1.4 |
| pfam | HRGMv2_3176_1 | HRGMv2_3176_1_283 | 344828 | 346936 | - | ACR_tran | MMPL | MMPL |
| STP | HRGMv2_3176_1 | HRGMv2_3176_1_284 | 347250 | 347858 | + | TetR_N |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_285 | 348019 | 350424 | + | GH5_4 |
| NULL(UNKNOWN) | HRGMv2_3176_1 | HRGMv2_3176_1_286 | 351732 | 353306 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3176_1 | HRGMv2_3176_1_287 | 353490 | 354980 | - | GH43_35 |
Gene ID: HRGMv2_3176_1_282
Type: TC
Location: 342170 - 344812 (-)
Type: TC
Location: 342170 - 344812 (-)
Gene ID: HRGMv2_3176_1_283
Type: pfam
Location: 344828 - 346936 (-)
Type: pfam
Location: 344828 - 346936 (-)
Gene ID: HRGMv2_3176_1_284
Type: STP
Location: 347250 - 347858 (+)
Type: STP
Location: 347250 - 347858 (+)
Gene ID: HRGMv2_3176_1_285
Type: CAZyme
Location: 348019 - 350424 (+)
Type: CAZyme
Location: 348019 - 350424 (+)
Gene ID: HRGMv2_3176_1_286
Type:
Location: 351732 - 353306 (-)
Type:
Location: 351732 - 353306 (-)
Gene ID: HRGMv2_3176_1_287
Type: CAZyme
Location: 353490 - 354980 (-)
Type: CAZyme
Location: 353490 - 354980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp905199285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.