Cluster: HRGMv2_3176_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3176
- CGC Family ID: CGCFAM_10318
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3176_8 | HRGMv2_3176_8_123 | 119265 | 120104 | - | 9.B.18.1.2 |
| STP | HRGMv2_3176_8 | HRGMv2_3176_8_124 | 120845 | 122143 | - | EPSP_synthase |
| TC | HRGMv2_3176_8 | HRGMv2_3176_8_125 | 122275 | 123162 | - | 3.D.1.8.1 |
| pfam | HRGMv2_3176_8 | HRGMv2_3176_8_126 | 123333 | 124124 | - | Pro_isomerase |
| pfam | HRGMv2_3176_8 | HRGMv2_3176_8_127 | 124446 | 126254 | - | GDPD | GPDPase_memb | GDPD_2 |
| CAZyme | HRGMv2_3176_8 | HRGMv2_3176_8_128 | 126658 | 128781 | + | CBM80 | GH5_4 |
| CAZyme | HRGMv2_3176_8 | HRGMv2_3176_8_129 | 129167 | 131098 | + | CBM22 | GH10 |
Gene ID: HRGMv2_3176_8_123
Type: TC
Location: 119265 - 120104 (-)
Type: TC
Location: 119265 - 120104 (-)
Gene ID: HRGMv2_3176_8_124
Type: STP
Location: 120845 - 122143 (-)
Type: STP
Location: 120845 - 122143 (-)
Gene ID: HRGMv2_3176_8_125
Type: TC
Location: 122275 - 123162 (-)
Type: TC
Location: 122275 - 123162 (-)
Gene ID: HRGMv2_3176_8_126
Type: pfam
Location: 123333 - 124124 (-)
Type: pfam
Location: 123333 - 124124 (-)
Gene ID: HRGMv2_3176_8_127
Type: pfam
Location: 124446 - 126254 (-)
Type: pfam
Location: 124446 - 126254 (-)
Gene ID: HRGMv2_3176_8_128
Type: CAZyme
Location: 126658 - 128781 (+)
Type: CAZyme
Location: 126658 - 128781 (+)
Gene ID: HRGMv2_3176_8_129
Type: CAZyme
Location: 129167 - 131098 (+)
Type: CAZyme
Location: 129167 - 131098 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp905199285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.