Cluster: HRGMv2_3169_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- CGC Family ID: CGCFAM_10267
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_4 | HRGMv2_3169_4_52 | 43518 | 44486 | - | 9.B.186.1.1 |
| NULL(UNKNOWN) | HRGMv2_3169_4 | HRGMv2_3169_4_53 | 44483 | 45397 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_3169_4 | HRGMv2_3169_4_54 | 45467 | 47266 | - | M03.UPB |
| CAZyme | HRGMv2_3169_4 | HRGMv2_3169_4_55 | 47406 | 48533 | + | GH18 |
| TF | HRGMv2_3169_4 | HRGMv2_3169_4_56 | 48525 | 48860 | - | HTH_3 |
| NULL(UNKNOWN) | HRGMv2_3169_4 | HRGMv2_3169_4_57 | 49018 | 49215 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3169_4 | HRGMv2_3169_4_58 | 49273 | 49836 | - | 4.F.1.1.7 |
Gene ID: HRGMv2_3169_4_52
Type: TC
Location: 43518 - 44486 (-)
Type: TC
Location: 43518 - 44486 (-)
Gene ID: HRGMv2_3169_4_53
Type:
Location: 44483 - 45397 (-)
Type:
Location: 44483 - 45397 (-)
Gene ID: HRGMv2_3169_4_54
Type: peptidase
Location: 45467 - 47266 (-)
Type: peptidase
Location: 45467 - 47266 (-)
Gene ID: HRGMv2_3169_4_55
Type: CAZyme
Location: 47406 - 48533 (+)
Type: CAZyme
Location: 47406 - 48533 (+)
Gene ID: HRGMv2_3169_4_56
Type: TF
Location: 48525 - 48860 (-)
Type: TF
Location: 48525 - 48860 (-)
Gene ID: HRGMv2_3169_4_57
Type:
Location: 49018 - 49215 (+)
Type:
Location: 49018 - 49215 (+)
Gene ID: HRGMv2_3169_4_58
Type: TC
Location: 49273 - 49836 (-)
Type: TC
Location: 49273 - 49836 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.