Cluster: HRGMv2_3169_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3169
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_2 | HRGMv2_3169_2_167 | 188622 | 190115 | + | 3.A.1.2.20 |
| TC | HRGMv2_3169_2 | HRGMv2_3169_2_168 | 190118 | 191155 | + | 3.A.1.2.15 |
| CAZyme | HRGMv2_3169_2 | HRGMv2_3169_2_169 | 191175 | 192218 | + | GH179 |
| pfam | HRGMv2_3169_2 | HRGMv2_3169_2_170 | 192238 | 193161 | + | AP_endonuc_2 |
| pfam | HRGMv2_3169_2 | HRGMv2_3169_2_171 | 193174 | 193989 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_3169_2 | HRGMv2_3169_2_172 | 194000 | 194986 | + | GH179 |
Gene ID: HRGMv2_3169_2_167
Type: TC
Location: 188622 - 190115 (+)
Type: TC
Location: 188622 - 190115 (+)
Gene ID: HRGMv2_3169_2_168
Type: TC
Location: 190118 - 191155 (+)
Type: TC
Location: 190118 - 191155 (+)
Gene ID: HRGMv2_3169_2_169
Type: CAZyme
Location: 191175 - 192218 (+)
Type: CAZyme
Location: 191175 - 192218 (+)
Gene ID: HRGMv2_3169_2_170
Type: pfam
Location: 192238 - 193161 (+)
Type: pfam
Location: 192238 - 193161 (+)
Gene ID: HRGMv2_3169_2_171
Type: pfam
Location: 193174 - 193989 (+)
Type: pfam
Location: 193174 - 193989 (+)
Gene ID: HRGMv2_3169_2_172
Type: CAZyme
Location: 194000 - 194986 (+)
Type: CAZyme
Location: 194000 - 194986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.