Cluster: HRGMv2_3169_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3169
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3169_2 | HRGMv2_3169_2_46 | 52427 | 54058 | - | 3.A.7.14.2 |
| NULL(UNKNOWN) | HRGMv2_3169_2 | HRGMv2_3169_2_47 | 54082 | 54363 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3169_2 | HRGMv2_3169_2_48 | 54520 | 56823 | - | GT51 |
Gene ID: HRGMv2_3169_2_46
Type: TC
Location: 52427 - 54058 (-)
Type: TC
Location: 52427 - 54058 (-)
Gene ID: HRGMv2_3169_2_47
Type:
Location: 54082 - 54363 (-)
Type:
Location: 54082 - 54363 (-)
Gene ID: HRGMv2_3169_2_48
Type: CAZyme
Location: 54520 - 56823 (-)
Type: CAZyme
Location: 54520 - 56823 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3169_2_47 | vegetarian > omnivore | 2.29878 | 0.00141 |
| HRGMv2_3169_2_47 | vegetarian > vegan | 16.93662 | 0.00565 |